Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00087 ATGACAACTATTGTTCCGTTTCCCTCGAATCTTTTGCCAGGAGATGGAAGCCCCGAATGGATGAGTAGGGCAGACAATGCATGGCAGCTGGTGGCTGCAACACTGGTGGGTCTGCAGAGTGTTCCAGGGCTCATAATATTGTATGGTGGAGCTGTGAAGAAGAAATGGGCAGTGAACTCAGCATTCATGTCACTCTATGCTTTTGCGTGTGTGTTTTTCTGCTGGGTTGTGTGGGGATACAGAATGTCCTTTGGTGACCCACTTGTCCCTTTCTGGGGAAAACCTGCCATGTCACTTGATCATGGATATCTCTTCGAGAGGGCCTTTCTGGGGGCCTTCCCTAATGCCACAATGGTGTATTTTCAGTGTGTGTTTGCAGCCATTACTCTGATTCTCATTGCCGGGGCTGTGTTGGGGCGCATGAACTTCTATGCTTGGATGCTGTTTGTGCCTTTGTGGCTCACATTCTCCTACACCTTCACAGCTTTCAGCATATGGAGTACTAATGGCTTCTTGTCCAAAATGGGGATAATAGATTACTCAGGTGGATATGTCATCCATTTGTCTTCTGGGGTTGCTGGTTTCACAGCTGCATATTGGGTCGGGCCAAGGCTAAACAAGGACAGGGAAAGGTTTCCTCCAAACAACATCCTTCTGATGCTGGCAGGTGCAGGGTTGTTGTGGATGGGGTGGACAGGGTTCAACGGAGGAGATCCATACATAGTGAATGCAGATGCTTCCCTTGCCGTACTCAACACCCACGCTTGCACTGCCACCAGCTTGCTCACTTGGGTCATTCTTGATGTCATCTTTTTCCGAAAGCCTTCTGTCATTGGAGCTGTTCAAGGCATGATCACTGGTTTGGTCTGCATTACTCCTGCCGCAGGAGTTGTGGAGGGATGGGCAGCACTTTTAATGGGAGTGTTCTCTGGGTCAATTCCTTGGTTCACCATGATGGTGGTTCACAAGAGATCAAAGCTACTGCAGAAGGTTGATGACACCATGGCAGTGTTCCACACTCACGCCATTGCAGGAACCTTAGGAGGATTACTCACTGGGCTGTTTGCCGAGCCAAGACTCAACAAATTGTTCTACGGAGTTCCTGGTCAATACGTTGGCTTTTTCTATGGTTTCCATTCCAACAAGGTGCACACAGGGTTCAGACAAATGGGGGTTCAAATCATTGGGATTATCTTTGTTGTCTTTGTCAATGTTGTCACCACAAGCTTGATATGCCTCTTCATTAGAGTTTTTGTTCCACTGAGAATGTCTGAAGAGGATATGGAGATTGGTGATGAAGCTGCTCATGGGGAAGAGGCTTATGCCATCTGGGGTCAGGGTGATAAGCTTGAAAATTCAAGTTCAAAGTATGGAAGTTCATTGTATGATGATGTTGAAGCTGGGTCACACAAGAAGAAACATGGTGGCGTGGTTGAGATGATGTAG 1446 0.4758 MTTIVPFPSNLLPGDGSPEWMSRADNAWQLVAATLVGLQSVPGLIILYGGAVKKKWAVNSAFMSLYAFACVFFCWVVWGYRMSFGDPLVPFWGKPAMSLDHGYLFERAFLGAFPNATMVYFQCVFAAITLILIAGAVLGRMNFYAWMLFVPLWLTFSYTFTAFSIWSTNGFLSKMGIIDYSGGYVIHLSSGVAGFTAAYWVGPRLNKDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYIVNADASLAVLNTHACTATSLLTWVILDVIFFRKPSVIGAVQGMITGLVCITPAAGVVEGWAALLMGVFSGSIPWFTMMVVHKRSKLLQKVDDTMAVFHTHAIAGTLGGLLTGLFAEPRLNKLFYGVPGQYVGFFYGFHSNKVHTGFRQMGVQIIGIIFVVFVNVVTTSLICLFIRVFVPLRMSEEDMEIGDEAAHGEEAYAIWGQGDKLENSSSKYGSSLYDDVEAGSHKKKHGGVVEMM 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00087 481 ProSitePatterns Ammonium transporters signature. 179 204 IPR018047 GO:0008519|GO:0016020|GO:0072488
Viun2g00087 481 Gene3D Ammonium transporter AmtB like domains 14 459 IPR029020 -
Viun2g00087 481 PANTHER AMMONIUM TRANSPORTER MEP2 10 453 IPR001905 GO:0008519|GO:0016020|GO:0072488
Viun2g00087 481 Pfam Ammonium Transporter Family 27 441 IPR024041 GO:0008519|GO:0016020|GO:0072488
Viun2g00087 481 SUPERFAMILY Ammonium transporter 20 423 - -
Viun2g00087 481 PRINTS Rhesus blood group protein signature 249 271 IPR002229 GO:0005886
Viun2g00087 481 PRINTS Rhesus blood group protein signature 218 236 IPR002229 GO:0005886
Viun2g00087 481 PRINTS Rhesus blood group protein signature 122 138 IPR002229 GO:0005886
Viun2g00087 481 FunFam Ammonium transporter 10 444 - -
Viun2g00087 481 NCBIfam ammonium transporter 25 441 IPR001905 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00087 Viun-Chr2 2059197 2067926 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00087 116 475 Inorganic Solute Cotransporters AT2G38290 61.667 2.80e-146 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00087 K03320 - gmx:100787856 898.271