Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00082 ATGAGTTCACGATCCTTGAGGGGAAATCGTCAGAGGAAAATGTTGCAGCTGGACCTGAACCTGGTACCACCATTAGAGGAGAACAGTGTCCAAAATGATGCTGATGATGATGATGATGTGGTTGAACTGTCACCAACTACATTTGCTCAGACTCGGAGCAATCAGAGGAGGAGGATTAACAGGAGGAGGAGCATTTATGATATAGATGATGAAACTGGAGAATTGCCAAAAGAGATAATAATTGACGGAAAAGTTTATAGAACTGTGGAAACTGGTAGCAGTTCTACGGAAGAAAAGGAAAAGGAAAAGGAAAAGGAAGAGGAAAAGGAAAAGGAAAAGGAAAAGGAAAAGAAGTCACCTGAACCTCCTAAGAAGCCGCCTCAACTTGACTGTCCAATATGCATGGCTGCATTTGAAGAACCGATGTCTACCAGGTGTGGTCATATCTTTTGTAGGGGTTGCATTAACAGTGCAATAGCTGCACAGGGTAAATGCCCTACCTGCAGAAAGAAGGTTACAAAGAACCAACTCATAAGGGTGTTTCTTCCATCTCTTAGTTAA 561 0.4242 MSSRSLRGNRQRKMLQLDLNLVPPLEENSVQNDADDDDDVVELSPTTFAQTRSNQRRRINRRRSIYDIDDETGELPKEIIIDGKVYRTVETGSSSTEEKEKEKEKEEEKEKEKEKEKKSPEPPKKPPQLDCPICMAAFEEPMSTRCGHIFCRGCINSAIAAQGKCPTCRKKVTKNQLIRVFLPSLS 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00082 186 MobiDBLite consensus disorder prediction 93 124 - -
Viun2g00082 186 SUPERFAMILY RING/U-box 130 175 - -
Viun2g00082 186 ProSiteProfiles Zinc finger RING-type profile. 131 169 IPR001841 -
Viun2g00082 186 SMART ring_2 131 168 IPR001841 -
Viun2g00082 186 MobiDBLite consensus disorder prediction 83 129 - -
Viun2g00082 186 Pfam Zinc finger, C3HC4 type (RING finger) 131 168 - -
Viun2g00082 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 185 IPR013083 -
Viun2g00082 186 MobiDBLite consensus disorder prediction 1 57 - -
Viun2g00082 186 PANTHER ELFLESS, ISOFORM B 16 184 - -
Viun2g00082 186 Coils Coil 94 119 - -
Viun2g00082 186 ProSitePatterns Zinc finger RING-type signature. 146 155 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00082 Viun-Chr2 1950973 1954339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00082 7 184 C3H Transcription Factor Family AT5G48655 41.000 5.50e-32 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00082 K22651 - gmx:100778432 152.525