Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00062 ATGTCAAATCCTGTTACCTTAAGTCTTCCAAATGGCAGGAAGAACAAAGTTTATTGGGTGAATAAGGATGGTGATGTTTGGTTTTGCAATGGTTGGAAAGAGTTTGCTGAATACTCTAAGTTGGATGTGTCACATTTTTTAGTGTTTGGATATGAAGGAAATTCTTTGTTTAACGTGATTATTTTTGGAAAAAGTGGTTTAGAAATAGAATACCCTTTAAGCAATGATGCTACTAATGAAGAAGTGGAAGAAATTGTTGAAGGTAGTGAATTTTCTGCAAAATTGAGTGAAGAGGGAAGTAAAAGGCCAAAAGAAGAAGTTGAAGAAAAAGAACAACAACAATCCAACAAACATTCTAGAAAGAGAGCATGTTCTGATTATTCCAAGCACATGAATAATGGCCAAAAAGGAGTTTCTCACTTGCCTTCTTCATCCCGTAAAAGTCCTGTGACCACTCAAGCAAGGACACCAAAGCCCCAAGATGATCTCTTCATCTGCGTCAAGTCAGGATTTCCGACTATACCATTTGAATATGCGAAGAAGTATGGTGAGGAAAGTGGAAGACGTGTGACTTTTCGTGTTGGGGAGAGATCGTGGAAAGTAAAGTTTTTGTTATATGGTCAACATTCCTTTGCTAGATTCTCTAGTGGCTGGTTTGATTTTGTTAGGGACTGTGACTTGAAACTGGGAGATGTTTGTATCCTTAGGATGCTAGATCAGGAAAATCTTGTGTTCAATGTTTCATGTTTAAAACCAAATAATTCATCTGGACCTAACAAAACATAG 786 0.3715 MSNPVTLSLPNGRKNKVYWVNKDGDVWFCNGWKEFAEYSKLDVSHFLVFGYEGNSLFNVIIFGKSGLEIEYPLSNDATNEEVEEIVEGSEFSAKLSEEGSKRPKEEVEEKEQQQSNKHSRKRACSDYSKHMNNGQKGVSHLPSSSRKSPVTTQARTPKPQDDLFICVKSGFPTIPFEYAKKYGEESGRRVTFRVGERSWKVKFLLYGQHSFARFSSGWFDFVRDCDLKLGDVCILRMLDQENLVFNVSCLKPNNSSGPNKT 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00062 261 Gene3D - 104 253 IPR015300 -
Viun2g00062 261 ProSiteProfiles B3 DNA-binding domain profile. 174 253 IPR003340 GO:0003677
Viun2g00062 261 Gene3D - 1 66 IPR015300 -
Viun2g00062 261 ProSiteProfiles B3 DNA-binding domain profile. 1 65 IPR003340 GO:0003677
Viun2g00062 261 MobiDBLite consensus disorder prediction 88 157 - -
Viun2g00062 261 CDD B3_DNA 166 251 IPR003340 GO:0003677
Viun2g00062 261 SUPERFAMILY DNA-binding pseudobarrel domain 170 250 IPR015300 -
Viun2g00062 261 MobiDBLite consensus disorder prediction 88 127 - -
Viun2g00062 261 Pfam B3 DNA binding domain 169 246 IPR003340 GO:0003677
Viun2g00062 261 PANTHER B3 DOMAIN-CONTAINING 1 241 - -
Viun2g00062 261 SMART B3_2 163 253 IPR003340 GO:0003677
Viun2g00062 261 SUPERFAMILY DNA-binding pseudobarrel domain 3 72 IPR015300 -
Viun2g00062 261 MobiDBLite consensus disorder prediction 128 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00062 Viun-Chr2 1383240 1385491 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00062 1 254 B3 DNA Binding Superfamily AT3G18990 23.377 4.59e-21 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Viun2g00062 B3 1.3e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00062 - - vun:114173592 533.872