Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00060 ATGAACTCTCTCTTTTCGCCTGAAAACCTTCCTCCACCACCGGGAATCCCAATCCCCGCCTCAATTGCCGCCGCCACAGCCACCACCAGCGCCTCCCCAGCCCCAACACTAATCCCAAAGCTTGAACCTTTCGACGAATGGCTCAACACCCCTACTTCCCAACAACAACAGTCTCAGGACCCAAATTTTTCAAATGGGTCTCTCGACCTCGACCTCAATCTTTTATGCGACGGAACCTCCGAACCAAACAATAACTTGTTCTCCGAGTTCAACAGAATCTCCCAGCTTTTCCGCACGGCGTTCTCCGCCAACGACCCGCAGAACGATGCCGTTCCCGACCCCATCACCGATAGCCTGCAGCAGCTCCGAAACGACGCCTTTTCCAACCCCTTTGCCGAAAACCCGCAGCACATCAAAACCGAAGCCGATTCGGACCCATGGCTGCAGCAGGCCCCAAAGGGCACCGTTCCGGACCCAGATTCTCAGGCAATTGTGCCCGTCCAGGAGGAGGAGCCTTCTTCGATGATGGCCGCAACCACGCCGCGGAGGCGGTGTAAGGAGCTGGTTCGAGTGGCGGATCTTGGCGGGCCGGAGCAACGGCACTTCCGGGACGTTGTCCGGCGGACTCGGATGGTGTATGACTCGCTTCGTGTGCTGGCGACGGTGGAGGACGAGCGGCGGGTGGACGCCCGCAGGGGGCGCAGCGATTTGCGAGCGTCGGCCGTGATGAGGAGCTGTGGTTTGTGGTTGAATCGCGACAAGAGAATTGTTGGTTCCATTCCTGGTGTTTGCGTTGGTGATGTGTTCCTCTATAGGATGGAGTTGTGCGTGGTTGGGTTGCACGGTCAACCTCAGGCCGGCATCGATTATCTTCCTGCCAGCATGAGTTCCAACGGCGAACCAATTGCCACGAGTGTGATTGTCTCCGGTGGTTACGAGGATGATGTTGACGAGGGTGATGTTATCACCTACTCCGGCCATGGTGGGCAGGACAAGAATTCTCGGCAGGTTTGTCACCAGAAGCTTGAGGGAGGGAACCTTGCAATGGAGCGGAGTAAACACTATGGGATTGAGGTTAGGGTGATTCGCGGGGTGCGCTATGAGGGTGCAGCCTCTGCCACTGGGAAGTTGTATGTCTATGACGGCTTGTATACGATTATCGATTGCTGGTTTGATGTTGGGAAGTCGGGTTTCGGTGTTTTCAAGTACAAGCTATGTAGGATCGATGGGCAAGCTAAGATGGGGAGCATGATCATGAAGGAAGCGCATATGCTAAAGAAGGATCCTTTGAGTTTCAAACCCATGTGTTGTGTTTCGCTTGATATTTCAAACAGGAAGGAGAATGTGGGGGTTCGCCTTTTCAATGATCTTGATCGCAATTTCGACCCTCTCAGGTATGAGTATCTTGTGAAGACAAACTTTCCTGAGTTCGTGTTTCACCAGAGTGGGAGGGGTACGGGTTGCGATTGTGTGGACGGGTGTGTTGAAGGGTGCTTCTGTGCCATGAAGAACGGAGGGGAGTTTCCCTATAATCACAGTGGGATTCTCTTGAGAGGGAAGCCTTTGGTTTTTGAGTGTGGCCCGTTTTGTCAATGCCCCCCTCATTGTCGGAATCGGGTGACACAGAAGGGTCTCAAGAACAGGATGGAGGTGTTTAGATCTAGGGAAACTGGTTGGGGAGTTAGGTCCTTGGATCTTATTCAAGCCGGTGCTTTTATATGTGAGTACACAGGGGTTGTGCTCAATAGGGAGCAAGCAGAACTTTTGTCCATGAATGGTGATTCCTTGATATATCCGAATCGGTTCACTGATAGGTGGTCGGAATGGGGTGACTTGTCTATGATAGACTCCAATTATGTGCGTCCATCTTATCCCTCGCTCCCTCCTTTGGATTTTGCTTTGGATGTGTCAAGAATGAGGAATGTTGCTTGCTATATGAGTCATAGTTCCACTCCCAATGTGTTGGTTCAGTTTGTCTTGTATGATCACAATAATTTGATGTTCCCTCACCTTATGCTGTTTGCGATGGAGAACATCCCTCCCATGAGAGAGCTCAGCCTTGATTATGGGGTAGCTGATGAGTGGACAGGAAAACTCTCTATATGTAACTGA 2112 0.5194 MNSLFSPENLPPPPGIPIPASIAAATATTSASPAPTLIPKLEPFDEWLNTPTSQQQQSQDPNFSNGSLDLDLNLLCDGTSEPNNNLFSEFNRISQLFRTAFSANDPQNDAVPDPITDSLQQLRNDAFSNPFAENPQHIKTEADSDPWLQQAPKGTVPDPDSQAIVPVQEEEPSSMMAATTPRRRCKELVRVADLGGPEQRHFRDVVRRTRMVYDSLRVLATVEDERRVDARRGRSDLRASAVMRSCGLWLNRDKRIVGSIPGVCVGDVFLYRMELCVVGLHGQPQAGIDYLPASMSSNGEPIATSVIVSGGYEDDVDEGDVITYSGHGGQDKNSRQVCHQKLEGGNLAMERSKHYGIEVRVIRGVRYEGAASATGKLYVYDGLYTIIDCWFDVGKSGFGVFKYKLCRIDGQAKMGSMIMKEAHMLKKDPLSFKPMCCVSLDISNRKENVGVRLFNDLDRNFDPLRYEYLVKTNFPEFVFHQSGRGTGCDCVDGCVEGCFCAMKNGGEFPYNHSGILLRGKPLVFECGPFCQCPPHCRNRVTQKGLKNRMEVFRSRETGWGVRSLDLIQAGAFICEYTGVVLNREQAELLSMNGDSLIYPNRFTDRWSEWGDLSMIDSNYVRPSYPSLPPLDFALDVSRMRNVACYMSHSSTPNVLVQFVLYDHNNLMFPHLMLFAMENIPPMRELSLDYGVADEWTGKLSICN 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00060 703 ProSiteProfiles SET domain profile. 547 690 IPR001214 GO:0005515
Viun2g00060 703 Gene3D - 255 415 IPR036987 -
Viun2g00060 703 SMART set_7 547 696 IPR001214 GO:0005515
Viun2g00060 703 Pfam SET domain 558 690 IPR001214 GO:0005515
Viun2g00060 703 Gene3D SET domain 416 703 IPR046341 -
Viun2g00060 703 ProSiteProfiles YDG domain profile. 258 407 IPR003105 -
Viun2g00060 703 Pfam Pre-SET motif 442 539 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Viun2g00060 703 SUPERFAMILY PUA domain-like 239 421 IPR015947 -
Viun2g00060 703 SMART G9a_1 253 411 IPR003105 -
Viun2g00060 703 SUPERFAMILY SET domain 430 702 IPR046341 -
Viun2g00060 703 ProSiteProfiles Pre-SET domain profile. 486 544 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Viun2g00060 703 MobiDBLite consensus disorder prediction 1 43 - -
Viun2g00060 703 Pfam SAD/SRA domain 257 411 IPR003105 -
Viun2g00060 703 SMART preset_2 439 531 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Viun2g00060 703 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 102 703 IPR025794 GO:0016571
Viun2g00060 703 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 165 691 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00060 Viun-Chr2 1367109 1374812 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00060 205 692 Su(var)3-9 homologs AT1G73100 39.157 1.91e-101 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Viun2g00060 SAD_SRA 3.9e-47 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00060 K11420 - gmx:100795514 1154.43