Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00052 ATGGGGAGGATCAAACCTCATGTTCTGCTACAGCAAAGCAAAAGGAAGAAGGGGCCTTCTCGCATAAGTACCACAACTATTATAGTCTGTGCATCGATTATTGTCATGCTTATGTATTTCCTGTTTTATAGACACTGGTCCAACAGGATAAGACTTCAACCAGAGAGCTACATATCAGTCTCTGAGGATGAAAATAAGCTTGTGGAATCCAAAAAATCTGATCTACCGGGATATGCAGTTGTAATTACCTCTAAAGGTTCTATTATTGTAGAACTTTATAAGGAAAGTGCCCCTGAAGTTGTTGATGAATTCATAGATTTATGTCAAAAAGGGCACTTCAAGGGGATGCTTTTTCACCAAGTAATTAAGCACTATGTAATTCAGGCAGGTCATAACAAAGGGCCTGGAGCTACTGAAGATTGGAACTTGTTAGGAAAGAAATATGCAAGTATGAGACATGAAGCATTCATGCTTGGAACTTCGAAGGGTAATTACTTCAACAAAGGATTTGATCTTTTCATCACAACTGCACCAATACCAGATCTAAGTGAAAAGCTTATTGTGTTTGGCCGAGTCATCAAGGGAGAGGATATTGTTCAGGAAATTGAAGAAGTGGATACAGATGAACATTACCAACCGAAAATTTCTATTGGGATACTTGATGTGGCTCTTAAAGAGATGGTGTGA 687 0.3872 MGRIKPHVLLQQSKRKKGPSRISTTTIIVCASIIVMLMYFLFYRHWSNRIRLQPESYISVSEDENKLVESKKSDLPGYAVVITSKGSIIVELYKESAPEVVDEFIDLCQKGHFKGMLFHQVIKHYVIQAGHNKGPGATEDWNLLGKKYASMRHEAFMLGTSKGNYFNKGFDLFITTAPIPDLSEKLIVFGRVIKGEDIVQEIEEVDTDEHYQPKISIGILDVALKEMV 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00052 228 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 86 224 IPR002130 GO:0000413|GO:0003755
Viun2g00052 228 SUPERFAMILY Cyclophilin-like 76 223 IPR029000 -
Viun2g00052 228 Gene3D - 62 227 IPR029000 -
Viun2g00052 228 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 81 222 IPR002130 GO:0000413|GO:0003755
Viun2g00052 228 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 118 130 IPR002130 GO:0000413|GO:0003755
Viun2g00052 228 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 184 199 IPR002130 GO:0000413|GO:0003755
Viun2g00052 228 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 92 107 IPR002130 GO:0000413|GO:0003755
Viun2g00052 228 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 171 183 IPR002130 GO:0000413|GO:0003755
Viun2g00052 228 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP21-4 1 225 - -
Viun2g00052 228 CDD cyclophilin 83 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00052 Viun-Chr2 1243814 1248288 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00052 56 224 U-box Gene Family AT5G67530 24.432 8.40e-14 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00052 - - gmx:100796043 411.379