Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00050 ATGAAACCCGACTTGTACGAAATCTCTGACGACGAATGGGAGAACCACTCCTTCAAACCCTCGCGCGTCCTCAAACGACCTCGCACTTCGTCTCCTCCTTCCCCGCCACCTATCGAGTCCTTCGCTTACACCTCTAAGGTCGACGTTTTAAGCGAAAACGACAGCGATTGCGTCGAAATCGCACCGAACGACGCCAATTTCCTCGATGACCTCGAGGACGCCGACATGGACGCTGCTGGCGGCGGTTATGCGGCGGCCTCGCGAGGCCGGAGGTTCATCATCGATGACGAAGACGAAGACGCTGAGGAGAACGGTGGAAAAGACGGACGCGTGGCGGAATCGTATGAGGTGGAGTCCAGCGAGGTGGAAGGAGAAGAAGTTGAAGAGTTGAACGAAAACGATGTCGTTGGTAGGGCTTTGCATAAGTGCGCGCGAATCTCTGCGGAGTTGAAGGGCGAACTCTTCGGCTCGTCGGGGACAGCGTGTGAGAGGTATTCGGAGGTGGAGTCTTCGTCAGTGAGGATCGTGACTCAGGAGGATGTGGATGTTGCGTGCGCGTCGGAGGATTCGGATTTTCAGCCATTACTAAAGCCGTATCAGTTGGTTGGTGTCAACTTTTTGCTTCTGCTGTATCGGAAGGGGATTGGAGGAGCCATATTGGCAGATGAAATGGGTCTCGGCAAAACAGTTCAGGCCATCACATATTTAACTTTGTTGAAACGCTTGCACAATGATTCTGGTCCACATCTTATAGTATGTCCTGCTTCTGTTTTGGAAAACTGGGAAAGGGAACTAAAAAGATGGTGTCCGTACTTTTCTGTTCTTCAATATCATGGCGCTGGACGTGCAGCATACTGCAAGGAGTTGAACTCTTTGTCCAAGGCACGATTGCCTCCTCCATTTAATGTTCTTCTTGTGTGTTATTCACTTTTCGAGCGTCACAGTGCACAGCAGAAAGATGATCGGAAAATTCTGAAGCGATGGAGATGGAGCTGTGTGTTGATGGATGAGGCACATGCTTTGAAGGACAAAAATAGCTTTAGGTGGAAAAATCTGATGTCTGTTGCACGAAATGCGAACCAACGCTTGATGTTGACTGGGACACCACTTCAAAATGATCTGCATGAATTATGGTCATTGTTGGAGTTTCTGATGCCTGATATTTTTGCTTCTGAAGACGTTGACCTAAAAAAGTTACTAAATGCAGAAGATAGAGATTTAATTGGTCGGATGAAGTCCATCTTAGGGCCATTTATTTTGCGGCGTCTGAAATCTGATGTGATGCAACAACTTGTTCCAAAAATACAGCAAGTTGAATATGTTATAATGGAAAGGCAGCAGGAATCTGCTTACAAGGAAGCCATTGAAGAGTATCGTGCAGTTTCACAAGCTCGGATGGCAAAATGTTCTGAGCTTAATTCAAAAAATTTACTAGCAGTGCTTCCCCGACGACAGATAAATAACTATTTCGTTCAGTTCCGCAAGATAGCAAATCATCCCTTGTTAATAAGGCGAATCTACAATGATGAGGATGTCATTCGCTTTGCTAGGAAGCTACATCCAATAGGTGCTTTTGGTTTTGAATGTACTTTGGACAGAGTTATAGAGGAACTTAAAAATTACAACGACTTTTCTATTCACCGGCTTTTACTTCATTATGGTGTCAATGATAGGAAGGGGGTCCTTTCGGATAAGCATGTTATGCTTTCTGCAAAATGTCGGGCCTTAGAAGAACTTCTTCCTTCACTAAAGAAGGATGGCCATCGAGCCTTGATCTTTAGTCAATGGACCTCAATGCTTGACATTTTGGAGTGGAGTTTGGATGTCATTGGATTGACCTATAGACGGCTAGATGGAAGGTAG 1863 0.4595 MKPDLYEISDDEWENHSFKPSRVLKRPRTSSPPSPPPIESFAYTSKVDVLSENDSDCVEIAPNDANFLDDLEDADMDAAGGGYAAASRGRRFIIDDEDEDAEENGGKDGRVAESYEVESSEVEGEEVEELNENDVVGRALHKCARISAELKGELFGSSGTACERYSEVESSSVRIVTQEDVDVACASEDSDFQPLLKPYQLVGVNFLLLLYRKGIGGAILADEMGLGKTVQAITYLTLLKRLHNDSGPHLIVCPASVLENWERELKRWCPYFSVLQYHGAGRAAYCKELNSLSKARLPPPFNVLLVCYSLFERHSAQQKDDRKILKRWRWSCVLMDEAHALKDKNSFRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFLMPDIFASEDVDLKKLLNAEDRDLIGRMKSILGPFILRRLKSDVMQQLVPKIQQVEYVIMERQQESAYKEAIEEYRAVSQARMAKCSELNSKNLLAVLPRRQINNYFVQFRKIANHPLLIRRIYNDEDVIRFARKLHPIGAFGFECTLDRVIEELKNYNDFSIHRLLLHYGVNDRKGVLSDKHVMLSAKCRALEELLPSLKKDGHRALIFSQWTSMLDILEWSLDVIGLTYRRLDGR 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00050 620 CDD SF2_C_SNF 562 620 - -
Viun2g00050 620 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 424 620 IPR027417 -
Viun2g00050 620 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 209 387 IPR014001 -
Viun2g00050 620 Pfam SNF2-related domain 216 502 IPR000330 GO:0005524|GO:0140658
Viun2g00050 620 MobiDBLite consensus disorder prediction 1 39 - -
Viun2g00050 620 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 422 IPR027417 -
Viun2g00050 620 FunFam Protein CHROMATIN REMODELING 19 isoform A 167 445 - -
Viun2g00050 620 Gene3D - 170 447 IPR038718 -
Viun2g00050 620 MobiDBLite consensus disorder prediction 1 21 - -
Viun2g00050 620 CDD DEXHc_Snf 196 389 - -
Viun2g00050 620 SMART ultradead3 192 397 IPR014001 -
Viun2g00050 620 Gene3D - 555 620 IPR027417 -
Viun2g00050 620 PANTHER SNF2/RAD54 HELICASE FAMILY 116 619 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00050 Viun-Chr2 1211485 1220799 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00050 217 619 RAD5 or RAD16-like Gene Family AT5G22750 23.946 1.43e-21 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Viun2g00050 SNF2_N 8.2e-56 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00050 K14439 - gmx:100806323 1036.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g00050 2 1211485 1220799 Viun2g00050 2 1211485 1220799 ECH