Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00049 ATGAAACCCGACTTGTACGAAATCTCTGACGACGAATGGGAGAACCACTCCTTCAAACCCTCGCGCGTCCTCAAACGACCTCGCACTTCGTCTCCTCCTTCCCCGCCACCTATCGAGTCCTTCGCTTACACCTCTAAGGTCGACGTTTTAAGCGAAAACGACAGCGATTGCGTCGAAATCGCACCGAACGACGCCAATTTCCTCGATGACCTCGAGGACGCCGACATGGACGCTGCTGGCGGCGGTTATGCGGCGGCCTCGCGAGGCCGGAGGTTCATCATCGATGACGAAGACGAAGACGCTGAGGAGAACGGTGGAAAAGACGGACGCGTGGCGGAATCGTATGAGGTGGAGTCCAGCGAGGTGGAAGGAGAAGAAGTTGAAGAGTTGAACGAAAACGATGTCGTTGGTAGGGCTTTGCATAAGTGCGCGCGAATCTCTGCGGAGTTGAAGGGCGAACTCTTCGGCTCGTCGGGGACAGCGTGTGAGAGGTATTCGGAGGTGGAGTCTTCGTCAGTGAGGATCGTGACTCAGGAGGATGTGGATGTTGCGTGCGCGTCGGAGGATTCGGATTTTCAGCCATTACTAAAGCCGTATCAGTTGGTTGGTGTCAACTTTTTGCTTCTGCTGTATCGGAAGGGGATTGGAGGAGCCATATTGGCAGATGAAATGGGTCTCGGCAAAACAGTTCAGGCCATCACATATTTAACTTTGTTGAAACGCTTGCACAATGATTCTGGTCCACATCTTATAGTATGTCCTGCTTCTGTTTTGGAAAACTGGGAAAGGGAACTAAAAAGATGGTGTCCGTACTTTTCTGTTCTTCAATATCATGGCGCTGGACGTGCAGCATACTGCAAGGAGTTGAACTCTTTGTCCAAGGCACGATTGCCTCCTCCATTTAATGTTCTTCTTGTGTGTTATTCACTTTTCGAGCGTCACAGTGCACAGCAGAAAGATGATCGGAAAATTCTGAAGCGATGGAGATGGAGCTGTGTGTTGATGGATGAGGCACATGCTTTGAAGGACAAAAATAGCTTTAGGTGGAAAAATCTGATGTCTGTTGCACGAAATGCGAACCAACGCTTGATGTTGACTGGGACACCACTTCAAAATGATCTGCATGAATTATGGTCATTGTTGGAGTTTCTGATGCCTGATATTTTTGCTTCTGAAGACGTTGACCTAAAAAAGTTACTAAATGCAGAAGATAGAGATTTAATTGGTCGGATGAAGTCCATCTTAGGGCCATTTATTTTGCGGCGTCTGAAATCTGATGTGATGCAACAACTTGTTCCAAAAATACAGCAAGTTGAATATGTTATAATGGAAAGGCAGCAGGAATCTGCTTACAAGGAAGCCATTGAAGAGTATCGTGCAGTTTCACAAGCTCGGATGGCAAAATGTTCTGAGCTTAATTCAAAAAATTTACTAGCAGTGCTTCCCCGACGACAGATAAATAACTATTTCGTTCAGTTCCGCAAGATAGCAAATCATCCCTTGTTAATAAGGCGAATCTACAATGATGAGGATGTCATTCGCTTTGCTAGGAAGCTACATCCAATAGGTGCTTTTGGTTTTGAATGTACTTTGGACAGAGTTATAGAGGAACTTAAAAATTACAACGACTTTTCTATTCACCGGCTTTTACTTCATTATGGTGTCAATGATAGGAAGGGGGTCCTTTCGGATAAGCATGTTATGCTTTCTGCAAAATGTCGGGCCTTAGAAGAACTTCTTCCTTCACTAAAGAAGGATGGCCATCGAGCCTTGATCTTTAGTCAATGGACCTCAATGCTTGACATTTTGGAGTGGAGTTTGGATGTCATTGGATTGACCTATAGACGGCTAGATGGAAGTACACAGGTAGCGGAGAGGCAAACAATAGTTGATACGTTCAATAACGATACTTCAATATTTGCATGCTTACTTTCCACGAGAGCTGGTGGACAGGGCCTAAACTTAACAGGAGCTGATACAGTTGTAATTCATGACATGGATTTTAACCCACAGATTGATAGGCAAGCTGAAGATCGTTGCCATCGAATTGGTCAAACAAAGCCTGTAACCATATATCGGCTAGTGACCAAGGGAACAGTTGATGAAAATGTCTATGAGATTGCAAAAAGAAAGCTAGTATTAGACGCTGCCGTTCTCGAGTCCATGGAGGAGATTAATGAAGGTGACATGCCCGAGAAGACCATGGGAGAGATATTGTCTGCTATTTTATTGAGTTAA 2238 0.4522 MKPDLYEISDDEWENHSFKPSRVLKRPRTSSPPSPPPIESFAYTSKVDVLSENDSDCVEIAPNDANFLDDLEDADMDAAGGGYAAASRGRRFIIDDEDEDAEENGGKDGRVAESYEVESSEVEGEEVEELNENDVVGRALHKCARISAELKGELFGSSGTACERYSEVESSSVRIVTQEDVDVACASEDSDFQPLLKPYQLVGVNFLLLLYRKGIGGAILADEMGLGKTVQAITYLTLLKRLHNDSGPHLIVCPASVLENWERELKRWCPYFSVLQYHGAGRAAYCKELNSLSKARLPPPFNVLLVCYSLFERHSAQQKDDRKILKRWRWSCVLMDEAHALKDKNSFRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFLMPDIFASEDVDLKKLLNAEDRDLIGRMKSILGPFILRRLKSDVMQQLVPKIQQVEYVIMERQQESAYKEAIEEYRAVSQARMAKCSELNSKNLLAVLPRRQINNYFVQFRKIANHPLLIRRIYNDEDVIRFARKLHPIGAFGFECTLDRVIEELKNYNDFSIHRLLLHYGVNDRKGVLSDKHVMLSAKCRALEELLPSLKKDGHRALIFSQWTSMLDILEWSLDVIGLTYRRLDGSTQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESMEEINEGDMPEKTMGEILSAILLS 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00049 745 FunFam Protein CHROMATIN REMODELING 19 isoform A 167 445 - -
Viun2g00049 745 Gene3D - 555 740 IPR027417 -
Viun2g00049 745 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 209 387 IPR014001 -
Viun2g00049 745 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 575 742 IPR001650 -
Viun2g00049 745 Pfam Helicase conserved C-terminal domain 572 684 IPR001650 -
Viun2g00049 745 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 328 726 IPR027417 -
Viun2g00049 745 Pfam SNF2-related domain 216 502 IPR000330 GO:0005524|GO:0140658
Viun2g00049 745 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 422 IPR027417 -
Viun2g00049 745 Gene3D - 170 447 IPR038718 -
Viun2g00049 745 MobiDBLite consensus disorder prediction 1 39 - -
Viun2g00049 745 PANTHER SNF2/RAD54 HELICASE FAMILY 116 722 - -
Viun2g00049 745 SMART helicmild6 601 684 IPR001650 -
Viun2g00049 745 MobiDBLite consensus disorder prediction 1 21 - -
Viun2g00049 745 CDD SF2_C_SNF 562 695 - -
Viun2g00049 745 CDD DEXHc_Snf 196 389 - -
Viun2g00049 745 SMART ultradead3 192 397 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00049 Viun-Chr2 1210809 1220799 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00049 217 723 RAD5 or RAD16-like Gene Family AT5G22750 26.677 1.82e-45 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Viun2g00049 SNF2_N 1.3e-55 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00049 K14439 - gmx:100806323 1276.92