Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Viun2g00048 | ATGGCTTCTGGTTCCTCATCCACACCCTTTTTGGGAATCAGACAACAAAATCAAACTCAGGTTTCACAACACCACCAACCCTCCACAGCTGCTTCATCAACTACTACTACTACTACTACTACTACTTCTACTACTACCACCACTCCAACCACAGTGCCTCAGAAGAAAAGAAGGAATCAACCAGGAACACCATATCCAGATGCTGAGGTGATAGCACTATCTCCGAAGACTCTAATGGCAACAAACAGGTTTATATGCGAAGTGTGCAATAAAGGGTTCCAAAGGGAGCAAAACCTACAGCTCCACAGAAGAGGACACAATCTGCCTTGGAAGCTGAAGCAGAAGAGTAACAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCTGAGCCCACATGTGTTCATCACGACCCTTCAAGGGCTCTCGGAGATCTCACTGGCATCAAAAAACACTACTCTCGCAAACACGGTGAGAAGAAGTGGAAGTGTGACAAATGCTCCAAAAAATATGCTGTTCAATCAGATTGGAAGGCACACTCCAAAACCTGTGGCACCAGAGAGTATAGATGTGACTGTGGCACCCTCTTCTCCAGGCGTGACAGTTTTATCACTCATAGGGCCTTTTGTGATGCTCTAGCACATGAGAGTGCAAGACACCCTTCAAACCTGAACCCTTTGGGAACCCATCATCTATATGGCACAAACCACATGAGCCTAGGACTAGGTGCCCAACTTCAGAACCAAGCACCCTCTGCTAACAGTTTATTGAGCCTTGGAAGTGCACCAAAGTTTGAGCACTTAATCTCTCCAAATCTGCACCATTCATCTGCATTTGGAGTGCAATCTCCACCCCACTCATCATTCTTCATAACTGACCCAAACCAAGCATTTCAAGACCTTCAGTCTCAGCAACAAGGACCCTTATTCTCAACCAAGCAACTCCACGGTCTTATGCAGCTCCCTGATCTTCAAGGAACCAACAACAACTCCACCTCTGCCTCATCACTGTCTGCTTCAGCAAACAACACCAATCTCTTCAACCTCAGCTTCTTTCCTAATACCAATACCAGTGGCAGCATAATCAACGACCAATTCAGCAACATAAGTGGAGGCAATGACCAAGGAACAACAACACTCTATAGCTCTAGTAGCCCTGTAAGTAACCAAGTTGGTTCAGGCTTGTCTTCACTCTTTGGCAATTCATCTTTGCAGCAAGATAACATGTCCCCTCACATGTCAGCCACTGCATTGCTTCAGAAAGCTGCTCAAATGGGTTCAACCACAACCACCAATGGTCCCTGCTCTCTTCTTAGAGGAACAGAAGAATTAGGTATAAGGTCAAGGATGGAGAGTGAGCACAGTAACCATCTGCGCGGATTGATGAACTCCTTTGCCAATGGAAACGCTTCCATATTTGGCAACGTGAAAGGGAACGAAAACAACCTTGGCCAGTTTCACAACGTTGTGGAGGAGCCTAAGAAGATGTCACAAAATCTTGGTTTGTGCTTTGGAGGGTCTGATAAGTTGACCTTGGACTTTTTGGGGGTTGGAGGAATGGTCAGAAACATGAACAGTGGTGGGTTTTCACAACGAGACCAACAGCACTCCATGGGAACTATGAGCCCCTTGGATCCTAAATTGGAATCAGCACAACCAAACCAAAACTTTGGAGCCTCAACACTCTAA | 1683 | 0.4587 | MASGSSSTPFLGIRQQNQTQVSQHHQPSTAASSTTTTTTTTTSTTTTTPTTVPQKKRRNQPGTPYPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAHESARHPSNLNPLGTHHLYGTNHMSLGLGAQLQNQAPSANSLLSLGSAPKFEHLISPNLHHSSAFGVQSPPHSSFFITDPNQAFQDLQSQQQGPLFSTKQLHGLMQLPDLQGTNNNSTSASSLSASANNTNLFNLSFFPNTNTSGSIINDQFSNISGGNDQGTTTLYSSSSPVSNQVGSGLSSLFGNSSLQQDNMSPHMSATALLQKAAQMGSTTTTNGPCSLLRGTEELGIRSRMESEHSNHLRGLMNSFANGNASIFGNVKGNENNLGQFHNVVEEPKKMSQNLGLCFGGSDKLTLDFLGVGGMVRNMNSGGFSQRDQQHSMGTMSPLDPKLESAQPNQNFGASTL | 560 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Viun2g00048 | 560 | Gene3D | Classic Zinc Finger | 67 | 132 | - | - | |
Viun2g00048 | 560 | FunFam | protein indeterminate-domain 12-like | 63 | 131 | - | - | |
Viun2g00048 | 560 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 86 | 106 | IPR013087 | - | |
Viun2g00048 | 560 | SMART | c2h2final6 | 84 | 106 | IPR013087 | - | |
Viun2g00048 | 560 | SMART | c2h2final6 | 160 | 180 | IPR013087 | - | |
Viun2g00048 | 560 | SMART | c2h2final6 | 125 | 155 | IPR013087 | - | |
Viun2g00048 | 560 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 84 | 106 | IPR013087 | - | |
Viun2g00048 | 560 | MobiDBLite | consensus disorder prediction | 1 | 58 | - | - | |
Viun2g00048 | 560 | MobiDBLite | consensus disorder prediction | 1 | 68 | - | - | |
Viun2g00048 | 560 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 30 | 528 | IPR031140 | - | |
Viun2g00048 | 560 | SUPERFAMILY | beta-beta-alpha zinc fingers | 83 | 180 | IPR036236 | - | |
Viun2g00048 | 560 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 138 | 217 | - | - | |
Viun2g00048 | 560 | Pfam | Zinc-finger double-stranded RNA-binding | 84 | 106 | IPR022755 | - | |
Viun2g00048 | 560 | Gene3D | Classic Zinc Finger | 138 | 217 | - | - | |
Viun2g00048 | 560 | MobiDBLite | consensus disorder prediction | 523 | 560 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Viun2g00048 | Viun-Chr2 | 1163475 | 1168286 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Viun2g00048 | 79 | 523 | C2H2 Transcription Factor Family | AT2G02080 | 46.570 | 1.62e-120 | 361 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Viun2g00048 | zf-C2H2_jaz | 3.4e-05 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Viun2g00048 | K25870 | - | gmx:100806198 | 855.129 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Viun2g00048 | 2 | 1163475 | 1168286 | Viun2g00048 | 2 | 1163475 | 1168286 | ECH |