Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00047 ATGGCTTCTGGTTCCTCATCCACACCCTTTTTGGGAATCAGACAACAAAATCAAACTCAGGTTTCACAACACCACCAACCCTCCACAGCTGCTTCATCAACTACTACTACTACTACTACTACTACTTCTACTACTACCACCACTCCAACCACAGTGCCTCAGAAGAAAAGAAGGAATCAACCAGGAACACCATATCCAGATGCTGAGGTGATAGCACTATCTCCGAAGACTCTAATGGCAACAAACAGGTTTATATGCGAAGTGTGCAATAAAGGGTTCCAAAGGGAGCAAAACCTACAGCTCCACAGAAGAGGACACAATCTGCCTTGGAAGCTGAAGCAGAAGAGTAACAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCTGAGCCCACATGTGTTCATCACGACCCTTCAAGGGCTCTCGGAGATCTCACTGGCATCAAAAAACACTACTCTCGCAAACACGGTGAGAAGAAGTGGAAGTGTGACAAATGCTCCAAAAAATATGCTGTTCAATCAGATTGGAAGGCACACTCCAAAACCTGTGGCACCAGAGAGTATAGATGTGACTGTGGCACCCTCTTCTCCAGGCGTGACAGTTTTATCACTCATAGGGCCTTTTGTGATGCTCTAGCACATGAGAGTGCAAGACACCCTTCAAACCTGAACCCTTTGGGAACCCATCATCTATATGGCACAAACCACATGAGCCTAGGACTAGGTGCCCAACTTCAGAACCAAGCACCCTCTGCTAACAGTTTATTGAGCCTTGGAAGTGCACCAAAGTTTGAGCACTTAATCTCTCCAAATCTGCACCATTCATCTGCATTTGGAGTGCAATCTCCACCCCACTCATCATTCTTCATAACTGACCCAAACCAAGCATTTCAAGACCTTCAGTCTCAGCAACAAGGACCCTTATTCTCAACCAAGCAACTCCACGGTCTTATGCAGCTCCCTGATCTTCAAGGAACCAACAACAACTCCACCTCTGCCTCATCACTGTCTGCTTCAGCAAACAACACCAATCTCTTCAACCTCAGCTTCTTTCCTAATACCAATACCAGTGGCAGCATAATCAACGACCAATTCAGCAACATAAGTGGAGGCAATGACCAAGGAACAACAACACTCTATAGCTCTAGTAGCCCTGTAAGTAACCAAGTTGGTTCAGGCTTGTCTTCACTCTTTGGCAATTCATCTTTGCAGCAAGATAACATGTCCCCTCACATGTCAGCCACTGCATTGCTTCAGAAAGCTGCTCAAATGGGTTCAACCACAACCACCAATGGTCCCTGCTCTCTTCTTAGAGGAACAGAAGAATTAGGTATAAGGTCAAGGATGGAGAGTGAGCACAGTAACCATCTGCGCGGATTGATGAACTCCTTTGCCAATGGAAACGCTTCCATATTTGGCAACGTGAAAGGGAACGAAAACAACCTTGGCCAGTTTCACAACGTTGTGGAGGAGCCTAAGAAGATGTCACAAAATCTTGGTTTGTGCTTTGGAGGGTCTGATAAGTTGACCTTGGACTTTTTGGGGGTTGGAGGAATGGTCAGAAACATGAACAGTGGTGGGTTTTCACAACGAGACCAACAGCACTCCATGGGAACTATGAGCCCCTTGGATCCTAAATTGGAATCAGCACAACCAAACCAAAACTTTGGAGCCTCAACACTCTAA 1683 0.4587 MASGSSSTPFLGIRQQNQTQVSQHHQPSTAASSTTTTTTTTTSTTTTTPTTVPQKKRRNQPGTPYPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAHESARHPSNLNPLGTHHLYGTNHMSLGLGAQLQNQAPSANSLLSLGSAPKFEHLISPNLHHSSAFGVQSPPHSSFFITDPNQAFQDLQSQQQGPLFSTKQLHGLMQLPDLQGTNNNSTSASSLSASANNTNLFNLSFFPNTNTSGSIINDQFSNISGGNDQGTTTLYSSSSPVSNQVGSGLSSLFGNSSLQQDNMSPHMSATALLQKAAQMGSTTTTNGPCSLLRGTEELGIRSRMESEHSNHLRGLMNSFANGNASIFGNVKGNENNLGQFHNVVEEPKKMSQNLGLCFGGSDKLTLDFLGVGGMVRNMNSGGFSQRDQQHSMGTMSPLDPKLESAQPNQNFGASTL 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00047 560 Gene3D Classic Zinc Finger 67 132 - -
Viun2g00047 560 FunFam protein indeterminate-domain 12-like 63 131 - -
Viun2g00047 560 ProSitePatterns Zinc finger C2H2 type domain signature. 86 106 IPR013087 -
Viun2g00047 560 SMART c2h2final6 84 106 IPR013087 -
Viun2g00047 560 SMART c2h2final6 160 180 IPR013087 -
Viun2g00047 560 SMART c2h2final6 125 155 IPR013087 -
Viun2g00047 560 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 106 IPR013087 -
Viun2g00047 560 MobiDBLite consensus disorder prediction 1 58 - -
Viun2g00047 560 MobiDBLite consensus disorder prediction 1 68 - -
Viun2g00047 560 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 30 528 IPR031140 -
Viun2g00047 560 SUPERFAMILY beta-beta-alpha zinc fingers 83 180 IPR036236 -
Viun2g00047 560 FunFam protein indeterminate-domain 5, chloroplastic-like 138 217 - -
Viun2g00047 560 Pfam Zinc-finger double-stranded RNA-binding 84 106 IPR022755 -
Viun2g00047 560 Gene3D Classic Zinc Finger 138 217 - -
Viun2g00047 560 MobiDBLite consensus disorder prediction 523 560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00047 Viun-Chr2 1163475 1168287 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00047 79 523 C2H2 Transcription Factor Family AT2G02080 46.570 1.62e-120 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun2g00047 zf-C2H2_jaz 3.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00047 K25870 - gmx:100806198 855.129