Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00044 ATGGGTAGTTGTGGAAGAGAAGGTGTAGTGAGACAGTATATAAGATCAAAAGTCCCTCGTTTAAGATGGACCCCTGAACTTCATCGTTGCTTTGTTTATGCCATTGAAACTCTCGGAGGTCATCACAAGGCAACTCCTAAGCTTGTTCTTCAATTGATGGATGTTAAAGGGCTCACAATTTCACATGTCAAGAGCCATCTGCAGATGTACAGAAGCATGAAAGGTGATTCCTGCAGACAAGACAAGACTTCCACCCAACATAGAAAACAACGTGATGATGAAGTGGGTGATGTTGGTTTCCACTATTGCTTCAAATCCATTGGAAAAGAATCTGATTCCCAACCCAGCTGCAGTGATTTCTCCCTTAAAAGAGCTAGAATCGAGAAGACAAGTTTTCTCTCATCAGGATTCCCACAATGCAGCCAAAGAATATGTGAAGCAGTACTCCCAAATCCATACACTACTTTTTATGATTACCTGCAGAGCATGGCTGAGCAGAAGGGAATAAAGAAGATTTGTGCTGCTTCAATATTTCAGACTCAATCCCTTTCCACAACCTTTCTTCCCATGCTACCAACCCAACCATCAGATTTCCTCCAGGTTGCCTACTTAAATGAGAAACAGCCTTTGAATGAAGTTGAGAAGAGTTGTAGGGTACAAGCAGAGGATGAAGACATGGGAGGCTGTGAGTTGTCACTGTCCATCTCATTGCCTCAGCCATATCCTTCTTCTCAGAGAAGTAATGCTTCTTCAGTCAGCGAGATCAGTGAGGCCTTTTCATTATGCCCTAAGTTTAACAACAACAACAACAACTACATGGGATGTTCTACTTCTTCTAATGTTTCAAACAAAGTTAATGTCGACCTATCTTTGGCCATTTGA 882 0.4195 MGSCGREGVVRQYIRSKVPRLRWTPELHRCFVYAIETLGGHHKATPKLVLQLMDVKGLTISHVKSHLQMYRSMKGDSCRQDKTSTQHRKQRDDEVGDVGFHYCFKSIGKESDSQPSCSDFSLKRARIEKTSFLSSGFPQCSQRICEAVLPNPYTTFYDYLQSMAEQKGIKKICAASIFQTQSLSTTFLPMLPTQPSDFLQVAYLNEKQPLNEVEKSCRVQAEDEDMGGCELSLSISLPQPYPSSQRSNASSVSEISEAFSLCPKFNNNNNNYMGCSTSSNVSNKVNVDLSLAI 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00044 293 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 8 94 IPR046955 GO:0003700
Viun2g00044 293 SUPERFAMILY Homeodomain-like 17 73 IPR009057 -
Viun2g00044 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 75 IPR017930 -
Viun2g00044 293 FunFam Myb family transcription factor 17 75 - -
Viun2g00044 293 Gene3D - 18 74 - -
Viun2g00044 293 NCBIfam myb-like DNA-binding domain, SHAQKYF class 19 73 IPR006447 GO:0003677
Viun2g00044 293 Pfam Myb-like DNA-binding domain 21 71 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00044 Viun-Chr2 1041427 1046534 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00044 1 74 G2-like Transcription Factor Family AT1G14600 70.886 9.47e-34 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Viun2g00044 Myb_DNA-binding 1.5e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00044 - - var:108335596 525.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g00044 2 1041427 1046534 Viun2g00044 2 1041427 1046534 ECH