Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g00037 ATGGAAAAGGTGGCTGCGCCTCCGATTCTGATGCAGCGGAAGCGCGATCTGTCGTACGGCGTCGTTGCGGGGAGTCCGAACGAGAGCTGGAAGTGGGAGTGGGACAGCGTGCGGTTCGCGGGGAAGGCTCCGAGCGACGACGTCGTGTTCGAGGAGGAGGGCGTCGCGGCCGTGGCTCCCCTGCAGCTCAACCTCGCGGGGAGGGTGAGCGGCGGTGGTAACAAGAGAGTGCGCTCGGGGTCGCCCGGAACGGCGACGTATCCGATGTGTCAGGTGGATAACTGCAGGGAGGATCTGTCGAAGGCGAAGGACTATCACAGGAGGCACAAGGTGTGCGAGGCGCATAGCAAAGCCTCCAAGGCGCTTCTCTCCAACCAGATGCAAAGGTTTTGTCAGCAGTGTAGTAGGTTTCACCCGCTGTCCGAGTTTGACGAGGGGAAACGGAGTTGCCGCCGTAGACTCGCTGGACACAACCGCCGCCGGAGGAAAACGCAGCCGGAGGATGTTACTTCCGCCACGCAGGCCCCCGCCGCCGCCGTCGCAGCAGCAGCAAATTTGGAAATCTTCAACTTGTTGACTGCAATAGCCGGAGCTTCGCAGGGAAAATTTGAAGAAAGATCACAAGTTCCGGATAGAGAGCAGCTTGTTCAGATTCTCAACAGGATACCTTTGCCTGCTGATCTTGCAACCAAATTGCGGGATGCTGGTAATGTCAACGGGAAAAAGGATCATGTACAATCGGAGACACCATCCTCCTATCACCATCATGACCAACTGAACCACACCCCAGCCGCCCCATTAACTATGGATTTACTTGCTGTTCTTTCCACCAGTCTGTCTGGGTCTGGCCCTGATGCCAATGCGTCCCCCTCTCAAAATCGAAGCTGGAGCAGTGATGGCGGTAGCTTTAAATCTAGGAGTAGTGCTGATCAGACGAGACAACAACACTTCTTTTCAGTTGGCGGAGAAAGAAGCAGTAGCAGTTCTCAGTCTCCAGTTGAAGATTCAGACTGCCAGGAGGATGTTAGAGTTAATTTACCGCTGCAACTCTTTAGCTCCTCCCCAGAAGAGGACAGCTTGCCTAAACTTGCATCTTCAAGAAAGTACTTCTCGTCTGACAGTAGTAACCCTGCAGAAGAGAGGTCACCATCGTCTTCTCCTCCTTCTCCTCCTGTCGTGGAGATGCAGTTTGATTTGCAGGGCGGTGCTACAGGTCTAAATCCGGAGAGCATATCTTCCGGAAGAGTAGTTAATTCAAACAAGGAAGCTAGCCAAAGTCATAGTTGTAATATATCTCTCTATCTATTTAAAGGGTCAAGTAAAAGGATCCAACAACCTAGTTGGCTTCAAAGTGTTCCATTTCAAGCTGGGTATACATCTTCGGGCTCTGATCATTCACCTCCCAGTTTGAATTCAGATGCTCAGGATCGCACTGGTAGAATAATGTTTAAACTTTTTGACAAGCATCCAAGCCATTTCCCAGAAACATTGCGAGCACAGATTTATAGTTGGCTTTCTAATAGGCCATCAGACATGGAGAGCTACATACGGCCTGGTTGTGTGGTCCTATCACTTTATGCTTCAATGTCTTCTGCTGCCTGGGAGAAACTAGAGGAAAACTTCCTCCAACATGTTCATTCCTTAATTCAAAATTCAGATTCTGACTTTTGGAGAAGTGGAAGGTTTCTAGTTCATTCTGGCAGCCAATTGGCTTCACACAAAGATGGGAAGGTACGCATATGCAAACCCTGGAGAACGTGGAAGTCGCCAGAGTTGATATCTGTGTCCCCTTTGGCAATTGTTAGTGGACAGGAAACCTCTATTTCATTGAAGGGCAGAAACCTGTCAACTCCTGGCACAAAGATCCACTGTACGGGTACTGGCTCTTACTCATCAGCTGAAGTCATCAGATCTTCATATCCGGGTGTCATGTATGATAATATAAAGTTAAGTGGTTTTAAAGTTCAGGATGTTTCACCTGGTGTTGTGGGTCGCTTTTTTATTGAGATTGAAAATGGTTTCAAGGGTAACAGTTTTCCAGTGATAATAGCTGATGAGACCATTTGCGAGGAATTGAGACCACTTGAGTCTGAATTTAACGAGGAGGAAAAAATATGCGATGCCATTTCAGAAGAGCATGAACATCATTTTGGAAGGCCGAGATCAAGGGAGGAGGCTTTGCATTTTTTGAATGAGCTTGGCTGGCTTTTCCAAAGAGAAAGGTTCTCATATGTGCATGAGGTTCCATGTTATTCGCTTGACAGATTCAAATTTGTACTCACATTTGCTGTGGAAAGAAACTGTTGCATGTTAGTCAAAACCCTTCTCGATGTACTGGTTGATAAACACTTGCAAGGGGAATCGTTGTCAACAGTGTCAGTGGAAATGTTGAATGCAATCCAACTCTTAAATAGAGCAGTGAAAAGAAAGAACATAGGCATGGTTGATTTGCTCATTCACTATTCTTTACCGGACAAAAATAGTACATCGAGGAAATATGTATTTCCTCCTAATCTTGAAGGTTCTGCTGGTATTACACCCTTGCACTTGGCAGCATGCACGGCTGGTTCTGAGAGTGTAGTTGACTCTTTAACAAGTGACCCACAGGAGATTGGCTTGAAGTGCTGGGAATCCCTTGTGGATGCTAACGGGCAGACTCCACATGCGTATGCTATAATGAGGAATAATAACTCTTATAATGTGCTGGTTGCCCGTAAACTTGCTGATAGACGAAGGGCTGAAATTTCAGTAACAATTGAGAATGAGATAGAGCAAGCCTCTCTAAGGGTAGAGCTTAACCAAAAGCAAAGTAACCTACTCAAACGAGGTCAGAGTTCTTGTGCCAAATGTGCGACTGCAGAAATTCGCTACAACAGAAGAGTTCCAGGTTCACAGGGTTTGCTTCACCGCCCCTTTATTTATTCAATGCTAGCTGTTGCTGCAGTTTGTGTATGTGTTTGTGTGTTCTTCCGTGGACGCCCTTGCGTAGGCTCAGTTGCTCCCTTCAGTTGGGAAACCCTGGATTTTGGCACAATGTAA 3039 0.4742 MEKVAAPPILMQRKRDLSYGVVAGSPNESWKWEWDSVRFAGKAPSDDVVFEEEGVAAVAPLQLNLAGRVSGGGNKRVRSGSPGTATYPMCQVDNCREDLSKAKDYHRRHKVCEAHSKASKALLSNQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQPEDVTSATQAPAAAVAAAANLEIFNLLTAIAGASQGKFEERSQVPDREQLVQILNRIPLPADLATKLRDAGNVNGKKDHVQSETPSSYHHHDQLNHTPAAPLTMDLLAVLSTSLSGSGPDANASPSQNRSWSSDGGSFKSRSSADQTRQQHFFSVGGERSSSSSQSPVEDSDCQEDVRVNLPLQLFSSSPEEDSLPKLASSRKYFSSDSSNPAEERSPSSSPPSPPVVEMQFDLQGGATGLNPESISSGRVVNSNKEASQSHSCNISLYLFKGSSKRIQQPSWLQSVPFQAGYTSSGSDHSPPSLNSDAQDRTGRIMFKLFDKHPSHFPETLRAQIYSWLSNRPSDMESYIRPGCVVLSLYASMSSAAWEKLEENFLQHVHSLIQNSDSDFWRSGRFLVHSGSQLASHKDGKVRICKPWRTWKSPELISVSPLAIVSGQETSISLKGRNLSTPGTKIHCTGTGSYSSAEVIRSSYPGVMYDNIKLSGFKVQDVSPGVVGRFFIEIENGFKGNSFPVIIADETICEELRPLESEFNEEEKICDAISEEHEHHFGRPRSREEALHFLNELGWLFQRERFSYVHEVPCYSLDRFKFVLTFAVERNCCMLVKTLLDVLVDKHLQGESLSTVSVEMLNAIQLLNRAVKRKNIGMVDLLIHYSLPDKNSTSRKYVFPPNLEGSAGITPLHLAACTAGSESVVDSLTSDPQEIGLKCWESLVDANGQTPHAYAIMRNNNSYNVLVARKLADRRRAEISVTIENEIEQASLRVELNQKQSNLLKRGQSSCAKCATAEIRYNRRVPGSQGLLHRPFIYSMLAVAAVCVCVCVFFRGRPCVGSVAPFSWETLDFGTM 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g00037 1012 MobiDBLite consensus disorder prediction 237 255 - -
Viun2g00037 1012 MobiDBLite consensus disorder prediction 403 422 - -
Viun2g00037 1012 FunFam Squamosa promoter-binding-like protein 14 81 151 - -
Viun2g00037 1012 SUPERFAMILY Ankyrin repeat 759 903 IPR036770 -
Viun2g00037 1012 ProSiteProfiles Zinc finger SBP-type profile. 87 164 IPR004333 GO:0003677
Viun2g00037 1012 Pfam SBP domain 90 163 IPR004333 GO:0003677
Viun2g00037 1012 SUPERFAMILY SBT domain 88 168 IPR036893 GO:0003677|GO:0005634
Viun2g00037 1012 MobiDBLite consensus disorder prediction 280 335 - -
Viun2g00037 1012 MobiDBLite consensus disorder prediction 153 174 - -
Viun2g00037 1012 MobiDBLite consensus disorder prediction 237 261 - -
Viun2g00037 1012 Gene3D - 756 947 IPR036770 -
Viun2g00037 1012 MobiDBLite consensus disorder prediction 280 422 - -
Viun2g00037 1012 MobiDBLite consensus disorder prediction 346 382 - -
Viun2g00037 1012 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 33 795 IPR044817 GO:0003677
Viun2g00037 1012 Gene3D - 80 151 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g00037 Viun-Chr2 954525 960501 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g00037 3 1012 SBP-box Gene Family AT1G20980 52.251 0.0 936
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Viun2g00037 SBP 1.4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g00037 - - gmx:100819004 1652.11