Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03563 ATGAGAGGAAGGAGCTATAGTCCTTCGCCACCGCGTTACAGCAGAAGAGGCGGAGGGAGGAGTCCCAGCCCTAGAGGCCGCTACCCTACCCGCCCCCGACAACAAGATCTCCCTACCAGCCTTCTTGTTCGTAACCTTCGCCACGACTGCAGGCCCGAGGATCTTCGCAGACCATTTGGTCAATTTGGTCCTCTGAAGGACATTTACCTGCCTAAGGATTACTACTCTGGAGAACCTCGGGGGTTTGGTTTTGTCCAATACGTCGATCCTGCTGATGCAGCCGATGCTAAATATCATATGGATGGCCAAATTCTTCTTGGTCGGGAGCTCACTGTCGTCTTTGCCGAGGAGAATAGAAAGAAGCCAACTGAGATGAGGTCGAGAGAGAGAAGGGGTCGATTTTATGATCGAAGGAGGTCTCCTCCTCGTTACTCTCGTTCACCCCGCTATTCTCGATCTCCACCACCACGCCATAGATCTCGTTCTCGGAGTCGTGACTATTATTCCCCTCCTAAACGAAGGGATTATTCGAGATCTCTCTCCCCTGAGGACAGAAGGTACAGTCGAGAAAGATCATATTCGCAGCATAGTAGGGAGAAGTCATACTCACGCTCTCCACCTTATAATGGGGGCTCGAGAAGTCGTAGTCACAGTCCTGCAAAGGGTCCAGGTCGAAGCAGAAGTCCAAGTCCGGACCGTGATGTTAGGGAACCAGCCCGTGGTAGGTCCCCCAGTCAGTGA 741 0.5263 MRGRSYSPSPPRYSRRGGGRSPSPRGRYPTRPRQQDLPTSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYSGEPRGFGFVQYVDPADAADAKYHMDGQILLGRELTVVFAEENRKKPTEMRSRERRGRFYDRRRSPPRYSRSPRYSRSPPPRHRSRSRSRDYYSPPKRRDYSRSLSPEDRRYSRERSYSQHSREKSYSRSPPYNGGSRSRSHSPAKGPGRSRSPSPDRDVREPARGRSPSQ 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03563 246 MobiDBLite consensus disorder prediction 1 37 - -
Viun1g03563 246 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 39 117 IPR000504 GO:0003723
Viun1g03563 246 SMART rrm1_1 40 113 IPR000504 GO:0003723
Viun1g03563 246 FunFam - 4 131 - -
Viun1g03563 246 MobiDBLite consensus disorder prediction 199 223 - -
Viun1g03563 246 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 41 110 IPR000504 GO:0003723
Viun1g03563 246 MobiDBLite consensus disorder prediction 119 143 - -
Viun1g03563 246 MobiDBLite consensus disorder prediction 160 198 - -
Viun1g03563 246 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 38 233 - -
Viun1g03563 246 MobiDBLite consensus disorder prediction 119 246 - -
Viun1g03563 246 Gene3D - 29 147 IPR012677 -
Viun1g03563 246 SUPERFAMILY RNA-binding domain, RBD 38 144 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03563 Viun-Chr1 41997643 42000170 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03563 39 170 Eukaryotic Initiation Factors Gene Family AT4G34110 26.515 1.11e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03563 K12900 - gmx:100775883 326.25