Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03562 ATGAGAGGAAGGAGCTATAGTCCTTCGCCACCGCGTTACAGCAGAAGAGGCGGAGGGAGGAGTCCCAGCCCTAGAGGCCGCTACCCTACCCGCCCCCGACAACAAGATCTCCCTACCAGCCTTCTTGTTCGTAACCTTCGCCACGACTGCAGGCCCGAGGATCTTCGCAGACCATTTGGTCAATTTGGTCCTCTGAAGGACATTTACCTGCCTAAGGATTACTACTCTGGAGAACCTCGGGGGTTTGGTTTTGTCCAATACGTCGATCCTGCTGATGCAGCCGATGCTAAATATCATATGGATGGCCAAATTCTTCTTGGTCGGGAGCTCACTGTCGTCTTTGCCGAGGAGAATAGAAAGAAGCCAACTGAGATGAGGTCGAGAGAGAGAAGGGGTCGATTTTATGATCGAAGGAGGTCTCCTCCTCGTTACTCTCGTTCACCCCGCTATTCTCGATCTCCACCACCACGCCATAGATCTCGTTCTCGGAGTCGTGACTATTATTCCCCTCCTAAACGAAGGGATTATTCGAGAAGGTACAGTCGAGAAAGATCATATTCGCAGCATAGTAGGGAGAAGTCATACTCACGCTCTCCACCTTATAATGGGGGCTCGAGAAGTCGTAGTCACAGTCCTGCAAAGGGTCCAGGTCGAAGCAGAAGTCCAAGTCCGGACCGTGATGTTAGGGAACCAGCCCGTGGTAGGTCCCCCAGTCAGTGA 720 0.525 MRGRSYSPSPPRYSRRGGGRSPSPRGRYPTRPRQQDLPTSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYSGEPRGFGFVQYVDPADAADAKYHMDGQILLGRELTVVFAEENRKKPTEMRSRERRGRFYDRRRSPPRYSRSPRYSRSPPPRHRSRSRSRDYYSPPKRRDYSRRYSRERSYSQHSREKSYSRSPPYNGGSRSRSHSPAKGPGRSRSPSPDRDVREPARGRSPSQ 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03562 239 MobiDBLite consensus disorder prediction 1 37 - -
Viun1g03562 239 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 39 117 IPR000504 GO:0003723
Viun1g03562 239 SMART rrm1_1 40 113 IPR000504 GO:0003723
Viun1g03562 239 MobiDBLite consensus disorder prediction 160 191 - -
Viun1g03562 239 Gene3D - 29 151 IPR012677 -
Viun1g03562 239 MobiDBLite consensus disorder prediction 119 143 - -
Viun1g03562 239 MobiDBLite consensus disorder prediction 119 239 - -
Viun1g03562 239 SUPERFAMILY RNA-binding domain, RBD 38 144 IPR035979 GO:0003676
Viun1g03562 239 FunFam - 4 131 - -
Viun1g03562 239 MobiDBLite consensus disorder prediction 192 216 - -
Viun1g03562 239 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 38 226 - -
Viun1g03562 239 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 41 110 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03562 Viun-Chr1 41997643 42000174 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03562 39 170 Eukaryotic Initiation Factors Gene Family AT4G34110 26.515 9.38e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03562 K12900 - gmx:100775883 280.411