Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03553 ATGCCAACATCGTGGGCTGATTTGGCTGCGAATTCCGCCTCTGAAAATGCGGGAACATCCAACTCCACAGCTCCGACGCGGCCCGTTTATGTGCCTCCGCATCTGAGGAACCGTGCAGCATCAGCATCAACAGAATCCACCCCTGCTCCGCCACCACCCAATGCGAATGCTAATAATAATGCCGGATCACGGTGGGGTGCGCCCAGAAACGGGTGGGGGAGCAGAAGCGGTGGTTGGGATCGGCGGGAAGTGAACCCCTTCGGAGATCAGGAGGATGCAGCTGAAGAGGGAGCAACAGCTTTTGGCGAGGAGCAGGAAAACACGGGAATTAATTTTGATGCTTACGAGGACATTCCCGTTGAGACGAGCGGTGAAAACGTGCCCCCACCTGTGAATACTTTTGCGGAGATTGACTTGGGCGAGGCTCTTAATCAGAACATTAGACGCTGCAAATATGTTAAACCAACGCCGGTCCAGCGGCATGCCATACCTATATCCCTTGGCGGACGGGATTTGATGGCTTGTGCACAGACTGGTTCCGGAAAGACTGCGGCATTCTGTTTCCCTATCATCAGTGGCATTATGAGAGGTCAAGGGCAGCCCCCCCAGCGGCCCCCTCGCGGTGCCCGTACAGTCTATCCACTTGCCCTTGTTCTGTCGCCGACTAGGGAGTTATCCGTGCAAATACTTGAAGAGGCTAGGAAGTTTTCATATCAGACAGGGGTCAGGGTCGTTGTTGCCTATGGTGGAGCTCCTATAAACCAGCAGCTACGGGAACTTGAGAGAGGGGTGGATATTCTTGTTGCAACTCCAGGAAGATTGGTAGATTTGCTGGAGAGAGCTAGAGTTTCATTGCAGATGATCAAATATTTGGCCTTAGATGAGGCAGATAGGATGCTGGACATGGGTTTTGAACCACAAATAAGGAAGATTGTAGAACAAATGGACATGCCTCCACCAGGTGCCAGACAGACTATGTTGTTCAGTGCCACATTTCCAAGAGAGATACAGAGACTAGCCTCTGATTTCCTTTCAAATTATATTTTTCTGGCCGTTGGAAGAGTGGGCTCAAGTACCGATTTGATTGTCCAAAGAGTTGAGTACGTTCAAGAGTCTGACAAGAGAAGTCACCTCATGGATCTTCTTCATGCGCAGAGGGCAAATGGTGTACAAGGAAAGCAAGCCTTGACTTTAGTTTTTGTGGAGACAAAGAAGGGAGCTGATGCTCTCGAGCATTGGTTGTGTCGTAATGGTTTTCCAGCAACTACTATTCACGGTGACAGGTCACAACAGGAAAGAGAATTGGCATTAAGATCATTTAAAACTGGCAACACCCCCATATTGGTTGCAACTGATGTGGCTGCACGCGGGCTTGACATTCCTCATGTTGCCCATGTGGTTAACTTTGACCTTCCTAATGATATTGATGATTATGTACACCGTATTGGAAGAACAGGGCGAGCAGGAAAGAAAGGCCTTGCAACTGCGTTCTTTAATGACAACAATGCATCACTAGCTAGGCCTTTAGCAGATCTGATGCAAGAAGCGAATCAAGAAGTACCTGATTGGCTCTCACGGTATGCTGCTCGCTCTTCTATTGGTGGTGGGCGGAACCGTCGAACAGGAGGAAACCGATTTGGTGGCCGTGACTTTCGAAGAGAAGGTTCTTTTAGTAGGGGTGGTGGTTCTGATTACTACAGTACAGGAAACAACAGTGGTGGATATGGCAATTCTGGTGGTTATGGTGGAGGATATGGTCCTGGGGTAACTAGTGCTTGGGACTGA 1785 0.4947 MPTSWADLAANSASENAGTSNSTAPTRPVYVPPHLRNRAASASTESTPAPPPPNANANNNAGSRWGAPRNGWGSRSGGWDRREVNPFGDQEDAAEEGATAFGEEQENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEALNQNIRRCKYVKPTPVQRHAIPISLGGRDLMACAQTGSGKTAAFCFPIISGIMRGQGQPPQRPPRGARTVYPLALVLSPTRELSVQILEEARKFSYQTGVRVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIKYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGARQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADALEHWLCRNGFPATTIHGDRSQQERELALRSFKTGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNASLARPLADLMQEANQEVPDWLSRYAARSSIGGGRNRRTGGNRFGGRDFRREGSFSRGGGSDYYSTGNNSGGYGNSGGYGGGYGPGVTSAWD 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03553 594 CDD SF2_C_DEAD 362 498 - -
Viun1g03553 594 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 96 528 - -
Viun1g03553 594 MobiDBLite consensus disorder prediction 1 86 - -
Viun1g03553 594 MobiDBLite consensus disorder prediction 1 27 - -
Viun1g03553 594 FunFam Probable ATP-dependent RNA helicase DDX4 94 352 - -
Viun1g03553 594 MobiDBLite consensus disorder prediction 534 594 - -
Viun1g03553 594 MobiDBLite consensus disorder prediction 543 557 - -
Viun1g03553 594 Pfam DEAD/DEAH box helicase 156 339 IPR011545 GO:0003676|GO:0005524
Viun1g03553 594 Gene3D - 353 532 IPR027417 -
Viun1g03553 594 Gene3D - 88 352 IPR027417 -
Viun1g03553 594 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 361 528 IPR001650 -
Viun1g03553 594 CDD DEADc_DDX3_DDX4 133 356 IPR044763 GO:0003724|GO:0005524
Viun1g03553 594 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 132 160 IPR014014 GO:0003724
Viun1g03553 594 SMART ultradead3 151 365 IPR014001 -
Viun1g03553 594 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 215 504 IPR027417 -
Viun1g03553 594 Pfam Helicase conserved C-terminal domain 374 489 IPR001650 -
Viun1g03553 594 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 163 350 IPR014001 -
Viun1g03553 594 FunFam ATP-dependent RNA helicase RhlB 353 532 - -
Viun1g03553 594 MobiDBLite consensus disorder prediction 561 577 - -
Viun1g03553 594 SMART helicmild6 408 489 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03553 Viun-Chr1 41958812 41964765 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03553 130 521 Eukaryotic Initiation Factors Gene Family AT3G19760 31.807 8.02e-62 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03553 K11594 - gmx:100781668 931.784