Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03530 ATGGCCTTCTGTAATAGGGTTGGAAATGTCTTGAGGCAGGGTGCTGCTGGCAGCACACAAGCACCTGTTGCATCCATGCTTAATTATATTCGCTGCATGTCTTCAAGCAAGCTTTTCATTGGAGGCCTTTCGTACGGAGTTGATGACCAGTCTCTTAGGGACGCATTTGCTAGTTTTGGAGACGTGGTTGAGGCAAGGGTTATAACTGATAGAGACACTGGTAGATCGAGGGGATTTGGATTTGTCAACTTCTCCAGTGATGAGTCTGCAAGTTCGGCACTGTCTGCAATGGACGGGCAGGATCTAAATGGGCGAAGCATCAGGGTATCTTACGCAAATGATAAACCTTCTGGACCTCGATCTGGCGGCGGTGGTGGTTATGGCGGTGGTGGTTATGCTTCTCGTAACGGCGGTGGAGGTGGAGGTGGTTATGGTGGTGGCGGTGGCGGTTGGTGA 456 0.5088 MAFCNRVGNVLRQGAAGSTQAPVASMLNYIRCMSSSKLFIGGLSYGVDDQSLRDAFASFGDVVEARVITDRDTGRSRGFGFVNFSSDESASSALSAMDGQDLNGRSIRVSYANDKPSGPRSGGGGGYGGGGYASRNGGGGGGGYGGGGGGW 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03530 151 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Viun1g03530 151 MobiDBLite consensus disorder prediction 109 151 - -
Viun1g03530 151 FunFam Glycine-rich RNA-binding protein 2 25 150 - -
Viun1g03530 151 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 108 IPR000504 GO:0003723
Viun1g03530 151 SUPERFAMILY RNA-binding domain, RBD 33 146 IPR035979 GO:0003676
Viun1g03530 151 Gene3D - 31 151 IPR012677 -
Viun1g03530 151 SMART rrm1_1 37 110 IPR000504 GO:0003723
Viun1g03530 151 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 34 147 - -
Viun1g03530 151 CDD RRM2_NsCP33_like 37 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03530 Viun-Chr1 41897700 41899513 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03530 35 127 Eukaryotic Initiation Factors Gene Family AT4G34110 39.785 5.83e-16 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03530 - - gmx:100527220 216.853
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03530 1 41897700 41899513 Viun1g03530 1 41897700 41899513 ECH