Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03514 ATGGAGGGAATAGGGTCAGGGTCAGGTTCGGCAGGTCCGGCACCGTTCCTACTGAAGACATACGAGATGGTGGATGATTCATCGACGGAGGAAATAGTATCGTGGAGTTCCAACAACAACACCTTCATCGTTTGGAACCCCGCTGAATTTTCTCGCCTTCTTCTTCCCACTTTTTTCAAACACAACAACTTTTCCAGCTTCATCCGACAGCTTAACACCTATGGATTTAGAAAAGTACACCCTGAGCGATGGGAGTTTGCTAATGAAGATTTTGTGAAAGATCAAAAGCATCTTCTAAAGAATATTCACCGCAGGAAACCTATCCACAGTCACTCACTCACACACCCCGTTGTGGATTCAGAAAGGTCTGCATTTGAGGAACAGATAGAGAAACTTTCACACGACAAGACCACCATTCAATCCAATATTTTCCGCTTCAAACAACACCACTCCGCTGCCAACACTCATCTTCAAGATCTGCTTCTGCGATTGGATGACATGGAGAAGAGGCAGCAAAATCTGCTCACCTTCTTTCAAAACGCTCTTCACAATCCTACTCTCGTTCAACACATCACTCGCAAAATCGAGTCCATGGATTTGCTGGCTTATAACAAGAAAAGGCGATTACCTCTTCAGCTTGAGGACCGTGATCAAGTTGCTGGAAACACGTTGGTTGAATGTTTTGGATCGGAATTTGGAGATGTTTCTCATCAAGATTTCTCCGATAAACTCACACTGGAATTGTCACCTGCTGTTTCAGAAATGAACTTGGTGGTGTCATGTAGTACACAGAGTTCAAATGAAGATGGAGAAAGCCCACATAAGATGATGCTTCCGGAGATAGCAGAGCTTGCACAAACTGGAGAGTCTCTTAATTTTGAGATGCATTCTTGTCTATCACGAACCGCCACAGCTTCTGAGAGCCCCAGATTAGATTCAAAATATGAAGATGGTGACAGTTATATATCCTGTCTTTTGAATCTATCTCTGGCATCTTCTCCATTACAAGCCAAGAGAAACACATGCCATGATAGAGCCCCATCCCTAATAGACTGTGCAGAATTTGGCAAATTGGAAGGATCAAAATTTTGTGCCAATGATATTAAAGAATATGACGCTGGAGCCTCTTCAAGCAGAAGTCTAAACGAGGACACTAATTCAGCTGAAGCTACCCCAACTGCTCCGGTCAGAGTAAATGATGTGTTCTGGGAACAGTTCCTTACTGAAAGACCAGGTTGTTCTGACACCGAAAACTCAATGTCCACCCACAAAGTAAATGCTTATGTTGCTGATGAAAATGAAGGGCGCTCGGTTCATGGAATCTCTGGAAATGTCATGGACAGGAATCAACTCACACTCTGA 1362 0.4361 MEGIGSGSGSAGPAPFLLKTYEMVDDSSTEEIVSWSSNNNTFIVWNPAEFSRLLLPTFFKHNNFSSFIRQLNTYGFRKVHPERWEFANEDFVKDQKHLLKNIHRRKPIHSHSLTHPVVDSERSAFEEQIEKLSHDKTTIQSNIFRFKQHHSAANTHLQDLLLRLDDMEKRQQNLLTFFQNALHNPTLVQHITRKIESMDLLAYNKKRRLPLQLEDRDQVAGNTLVECFGSEFGDVSHQDFSDKLTLELSPAVSEMNLVVSCSTQSSNEDGESPHKMMLPEIAELAQTGESLNFEMHSCLSRTATASESPRLDSKYEDGDSYISCLLNLSLASSPLQAKRNTCHDRAPSLIDCAEFGKLEGSKFCANDIKEYDAGASSSRSLNEDTNSAEATPTAPVRVNDVFWEQFLTERPGCSDTENSMSTHKVNAYVADENEGRSVHGISGNVMDRNQLTL 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03514 453 PRINTS Heat shock factor (HSF) domain signature 16 39 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun1g03514 453 PRINTS Heat shock factor (HSF) domain signature 54 66 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun1g03514 453 PRINTS Heat shock factor (HSF) domain signature 67 79 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun1g03514 453 FunFam Heat shock transcription factor 1 9 106 - -
Viun1g03514 453 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 7 263 IPR027725 -
Viun1g03514 453 SMART hsfneu3 12 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun1g03514 453 Gene3D - 10 106 IPR036388 -
Viun1g03514 453 Pfam HSF-type DNA-binding 16 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun1g03514 453 SUPERFAMILY "Winged helix" DNA-binding domain 12 105 IPR036390 -
Viun1g03514 453 ProSitePatterns HSF-type DNA-binding domain signature. 55 79 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03514 Viun-Chr1 41820317 41822318 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03514 16 453 HSF AT4G13980 48.491 7.23e-128 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Viun1g03514 HSF_DNA-bind 1.3e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03514 K09419 - gmx:100816484 528.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03514 1 41820317 41822318 Viun1g03514 1 41820317 41822318 ECH