Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03504 ATGTTCTCAATCACAGCACACCCTGTTAACTCCAAAACTCTACATTCCGTCTCTCAACTCTTATTGTATTTCACTCTCCTGTGCACGTACACCGCCATTGCCGACGATGGCGCGTTCATGTCCAAGCTGGCCAAAGCCTTGAGTCCCACACCGTCGGGGTGGTCGGGGAGCAGCTTCTGTGACTGGAAGAACGTGAGGTGCACCACCAACCGCGTCACATCAATCAACATCGCTTCGCAGTCGCTCACCGGAACGCTACCTCCGGATCTCAACTCCCTCTCCCAACTCACCTCGCTCTCTCTCCAGGGCAACGCGCTCGCCGGCGCGTTGCCTTCCCTCGCCAACCTCTCCATGCTGCAAACCGTGTTCCTCGGGGGCAACAACTTCACCTCCATTCCCAACGGTTGCTTCCAGGGTCTCACTAGCTTACAGAGCCTTAGCATGGCAGACAGCGTCAATCTCGCTCCATGGACGATTCCCGCCGAGTTGACTCAGTCCACAAACCTCGTCAAACTCGATCTCGGAAACACAAACCTCATTGGTACCTTGCCTGATGTGTTTGACTCCCTTTTGAGTTTGCAGGAGCTTCGTCTCTCTTTCAACAATCTCACTGGTGGTTTGCCAAAGACCTTCGCGGGATCTGGGATTCAGTATCTGTGGCTCCACAATCAGAAAGACGGGTTCGGGTTTTCTGGTACTATTGAGGTGCTTGCTTCCATGACCCATTTGTCTCAGGTGTGGTTTCAGAAGAACCTTTTCACGGGTGCCATTCCGGATTTGTCAAATTGCACCACTTTGTTTGATCTGCATCTGAGAGACAATCAGTTAACCGGTGTGGTTCCACCTTCTCTCATATCCCTTTCTAGTTTGCAGAACGTCTCTTTAGACAACAATATGCTTCAGGGTCCTTTTCCTTCGTTTGGTAAAGGTGTGAAGGTCACTCTCGAAGGGGTGAATAGTTTTTGTAGGAAAGACTCTGGACCCTGCGATTCTCGCGTCACCACTTTGCTTGATATTGCCAAAGATTTCGGCTATCCCGTTCAGTTGGCGCGTTCCTGGATCGGGGATGATCCTTGTAACGATTGGAGTTTCGTTGTGTGTGCTGCGGGGAAGATTGTTACTGTGCATTTAGCGAAGCAGAATTTGACGGGAACGATTTCACCTGCATTTGCCAATTTAACTGATTTGAGAAACCTGTATCTCAATGACAATCATTTAGGGGGATCAATACCGGGAGGCTTGACTAACTTGGCTCAGCTTGAGGTTCTGGATGTGACTAATAACAATCTATCTGGTGATGTTCCAAAGTTCCCAACCAAGGTTAAGTTCAGTACTACAGGTAATCCTCTCCTTGGGCATTCTGGAGGTGGTGGTGGCAGTGGAACTACTCCATCAAGCGGTTCTGGTGATGCACCAAGTGGAAGTCCAAATGCAATTTCAAGTGATTTTTCACTCTCTCCTGCTTGGATCGCAGGTATTGTGGTTATTGCTGTATTTTTTGTGGCGCTGGTTGTGCTTGTCTTTTTCGTGGGCCATACCAAAAACTGGTACGGGAGATTGGGAAAGGTTAAGAATCTAGAAAAGGAAAAGAAAGTTGTTCCGAGAATTGAGGATGAATTTGTTACCATGTCAATTCAATTTCTTCGACAAGTAACGAAAAATTTCAGTGAAGAAAACATTTTGGGTAGAGGGGGATTTGGAGTGGTTTACAGAGGGGAATTGGAGGATGGAAATAAAATTGCTGTGAAGAGGATGAAATGTGGTTCTTGTAAAGGAACGAAGGAGTTGGAAGCAGAAATTGTAGTTCTGAGAAAAGTGAGACATAGGCACTTGGTGGCTTTTTTAGGACATTGCATTGAGAACGACGAAAGAGTTTTGGTGTATGAGTATATGCCTCAAGGGACATTATCTCAACATCTGTTCTCTTGGCGTGAAAATGACAGTACTACTTTGAGTTGGAAACAAAGGGTAACAATAGCTTTGGACGTAGCACGAGGAGTGGAATATTTACATCGTTTAGCTCAGCAAAGCTTCATACACAGAGACTTAAAACCCTCAAACATATTATTGGGAGATGATATGAGAGCCAAGGTTGCAGATTTTGGTTTGGTTAAAATGATTGCTCCAGGTGGAAAGGATTCTGTGTGGACACAAGTGGCGGGAACACTTGGATATCTGGAACCTGAATATGCAGCTACCGGAAGAGTAACGAGAAAAGTGGACGTCTATGCATTTGGAGTAGTTTTGATGGAACTAATCAGCGGTAGAAAGGCATTGGACAATAGTTTGGACGAAGAGATGTGGCATTTGGTTCCTTGGTTTCGTAGGATTGTAAATAATATGGAAAACATCTTACAAGTAACTGATGAAAGTTTGAACCTCGACGATGAAACAATGGAAAGTATATGTAAAGTGGCTGAGCTAGCATGTCATTGCACTGCTCCTGAACCCCATAAAAGGCCTGATATGGGACATGGAGTGAATGTCTTGGTTCCTCTGGTGGAACAATGGAATCCCATCTCCACTCATCAACAAGAAGAAGGTTGTGATGTAATATATGAAGAAAATTATGATATGTCTATCTCGGAAATCTTCTCAGGCCGATGA 2607 0.4572 MFSITAHPVNSKTLHSVSQLLLYFTLLCTYTAIADDGAFMSKLAKALSPTPSGWSGSSFCDWKNVRCTTNRVTSINIASQSLTGTLPPDLNSLSQLTSLSLQGNALAGALPSLANLSMLQTVFLGGNNFTSIPNGCFQGLTSLQSLSMADSVNLAPWTIPAELTQSTNLVKLDLGNTNLIGTLPDVFDSLLSLQELRLSFNNLTGGLPKTFAGSGIQYLWLHNQKDGFGFSGTIEVLASMTHLSQVWFQKNLFTGAIPDLSNCTTLFDLHLRDNQLTGVVPPSLISLSSLQNVSLDNNMLQGPFPSFGKGVKVTLEGVNSFCRKDSGPCDSRVTTLLDIAKDFGYPVQLARSWIGDDPCNDWSFVVCAAGKIVTVHLAKQNLTGTISPAFANLTDLRNLYLNDNHLGGSIPGGLTNLAQLEVLDVTNNNLSGDVPKFPTKVKFSTTGNPLLGHSGGGGGSGTTPSSGSGDAPSGSPNAISSDFSLSPAWIAGIVVIAVFFVALVVLVFFVGHTKNWYGRLGKVKNLEKEKKVVPRIEDEFVTMSIQFLRQVTKNFSEENILGRGGFGVVYRGELEDGNKIAVKRMKCGSCKGTKELEAEIVVLRKVRHRHLVAFLGHCIENDERVLVYEYMPQGTLSQHLFSWRENDSTTLSWKQRVTIALDVARGVEYLHRLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVKMIAPGGKDSVWTQVAGTLGYLEPEYAATGRVTRKVDVYAFGVVLMELISGRKALDNSLDEEMWHLVPWFRRIVNNMENILQVTDESLNLDDETMESICKVAELACHCTAPEPHKRPDMGHGVNVLVPLVEQWNPISTHQQEEGCDVIYEENYDMSISEIFSGR 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03504 868 FunFam Leucine-rich repeat receptor-like kinase 331 454 - -
Viun1g03504 868 SUPERFAMILY Protein kinase-like (PK-like) 537 828 IPR011009 -
Viun1g03504 868 Pfam Protein kinase domain 556 825 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g03504 868 CDD STKc_IRAK 561 833 - -
Viun1g03504 868 Gene3D Transferase(Phosphotransferase) domain 1 631 858 - -
Viun1g03504 868 SMART LRR_typ_2 190 213 IPR003591 -
Viun1g03504 868 SMART LRR_typ_2 116 139 IPR003591 -
Viun1g03504 868 SMART LRR_typ_2 93 115 IPR003591 -
Viun1g03504 868 SMART LRR_typ_2 393 417 IPR003591 -
Viun1g03504 868 MobiDBLite consensus disorder prediction 458 476 - -
Viun1g03504 868 Gene3D Phosphorylase Kinase; domain 1 518 630 - -
Viun1g03504 868 FunFam Receptor-like kinase TMK4 34 327 - -
Viun1g03504 868 ProSitePatterns Serine/Threonine protein kinases active-site signature. 678 690 IPR008271 GO:0004672|GO:0006468
Viun1g03504 868 FunFam PTI1-like tyrosine-protein kinase 3 631 844 - -
Viun1g03504 868 PANTHER OSJNBA0070M12.3 PROTEIN 20 863 - -
Viun1g03504 868 ProSitePatterns Protein kinases ATP-binding region signature. 561 583 IPR017441 GO:0005524
Viun1g03504 868 Gene3D Ribonuclease Inhibitor 330 454 IPR032675 -
Viun1g03504 868 Gene3D Ribonuclease Inhibitor 37 328 IPR032675 -
Viun1g03504 868 ProSiteProfiles Protein kinase domain profile. 555 834 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g03504 868 Pfam Leucine rich repeat 374 430 IPR001611 GO:0005515
Viun1g03504 868 Pfam Leucine rich repeat 94 148 IPR001611 GO:0005515
Viun1g03504 868 FunFam receptor-like protein kinase FERONIA 522 630 - -
Viun1g03504 868 MobiDBLite consensus disorder prediction 452 476 - -
Viun1g03504 868 SMART serkin_6 555 834 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g03504 868 SUPERFAMILY L domain-like 31 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03504 Viun-Chr1 41742269 41745166 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03504 56 839 Receptor kinase-like Gene Family AT5G49660 28.666 9.53e-90 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Viun1g03504 Pkinase 1.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03504 - - ccaj:109809286 1201.42