Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03500 ATGGCTACTTTTAAAAGCTATTTGATTTGTAGAAGAGCAGATAATCCTTTCAAAATCTCCAGATTTCGTAGCACTTGCTTTTTTTCACTAGAAGCTACATGCTGGCATATATACGGTGGCTTGAGATATTATCATTCTGGGTCAGAATGGGGTAAAAATCAGAGATTGAATCCAAACCAGAAGCCAAACAGGGTGGGGCTTTTCTGGGACTTGGACAATAAACCACCCAATGCAATTCCACCTTTTGAAGTTGCCAATAAGCTGAGAGTAGCTGCATCTTCCTTTGGGATTGTTCGTTACATGGTGGCTTATGCAAATAGCCACACTTTTAGTCATGTTCCTCAATCTGTACGGGAGAAAAGGAAAGAGAAGGAACTGTTGTATCGTTTAGAGAACAAGGGTGTCATCAAGCCAAATGAACCTTATCGTTGTCGGGTTTGTGGGAGAAAGTTTTATACTAATGACAAGCTTGTCAACCATTTCAAGCAACTGCATGAGCGTGAGCACGGGAAAAGGATGAATCAGATTGAGTCTGCTAGAGGGAGCAGGAAGGTGAAGTTGGTGGCTAAGTATTCTATGAAAATGGAAAAGTATAAGAAGGCTGCAAGTGCTATTCTCACACCCAAAGTGGGGTATGGTTTGGCAGATGAGCTCAAACGGGCTGGGTTTTGGGTTCAAACTGTGTTGGATAAGCCGCAAGCTGCAGATCGAGCATTGCAAAGCCACATTGTGGATGTCATGGATCATAGGCGGGTTGAGTGTGTGGTTCTTGTGTCTGATGATTCTGATTTTGTTGATGTGATAAAGGAAGCAAGGCTGCGATGTCTGAAGACGGTTGTCGTTGGGGACATTGATGATGGTGTCTTGAAGAGAACTGCTGATACTGCCTTTTCTTGGGAGGAAATTCTGATGGGGAAGGCTAAAAAACAGGCCGTTTCGGTTGTGAAAAACTGGAAGGATCGTGATATTTTGAAGAGGTTGGAGTGGACATATAACCCAGATGCAGATAAAAAGAAATTGGATGTGGATAATTTCATTGCTGAAACATCTGAAGATGATAATATTGAGGATACCTCAGATGAAGTTGATGAACATAAGAGAAAGATGGAAGTAAAGCGGAGTCTAATGTAG 1131 0.4218 MATFKSYLICRRADNPFKISRFRSTCFFSLEATCWHIYGGLRYYHSGSEWGKNQRLNPNQKPNRVGLFWDLDNKPPNAIPPFEVANKLRVAASSFGIVRYMVAYANSHTFSHVPQSVREKRKEKELLYRLENKGVIKPNEPYRCRVCGRKFYTNDKLVNHFKQLHEREHGKRMNQIESARGSRKVKLVAKYSMKMEKYKKAASAILTPKVGYGLADELKRAGFWVQTVLDKPQAADRALQSHIVDVMDHRRVECVVLVSDDSDFVDVIKEARLRCLKTVVVGDIDDGVLKRTADTAFSWEEILMGKAKKQAVSVVKNWKDRDILKRLEWTYNPDADKKKLDVDNFIAETSEDDNIEDTSDEVDEHKRKMEVKRSLM 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03500 376 Gene3D Classic Zinc Finger 115 204 - -
Viun1g03500 376 SUPERFAMILY beta-beta-alpha zinc fingers 138 168 IPR036236 -
Viun1g03500 376 ProSitePatterns Zinc finger C2H2 type domain signature. 144 165 IPR013087 -
Viun1g03500 376 Coils Coil 355 375 - -
Viun1g03500 376 Pfam NYN domain 214 294 IPR021139 GO:0004540
Viun1g03500 376 SMART c2h2final6 142 165 IPR013087 -
Viun1g03500 376 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 53 362 - -
Viun1g03500 376 MobiDBLite consensus disorder prediction 360 376 - -
Viun1g03500 376 CDD PIN_LabA-like 152 283 - -
Viun1g03500 376 ProSiteProfiles Zinc finger C2H2 type domain profile. 142 170 IPR013087 -
Viun1g03500 376 MobiDBLite consensus disorder prediction 353 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03500 Viun-Chr1 41708941 41710763 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03500 59 363 C2H2 Transcription Factor Family AT4G12240 61.076 5.15e-139 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun1g03500 NYN 1.4e-06 CL0280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03500 - - gmx:100789840 613.224