Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03480 ATGGGAAGAGGAAGAGTGGAGTTGAAGAGAATTGAGAACAAGATCAACAGGCAAGTGACCTTTGCAAAACGAAGGAACGGGCTTTTGAAGAAAGCTTATGAGCTTTCCGTTCTTTGTGATGCCGAGCTTGCTCTCATCATCTTCTCCACTAGAGGAAAGTTGTACGAGTTTTGCAGCACTTCAAGCATGCTGAAAACACTAGAGAGGTATCAGAAATGTAACTATGGAGCGCCCGAGGCCAATGCGTCAACAAAGGAAGCCTTGGAGTTAAGCAGTCAACAAGAGTATTTGAAGCTGAAAGCACGCTATGAAGCTCTACAACGTTTTCAAAGGAACCTTATGGGAGAAGATCTTGGCCCTCTAAGCAGCAATGAGCTTGAATCACTTGAAAGGCAGCTAGATTCGTCTTTGAAGCAAATCAGATCAACAAGGACCCAATTCATGCTGGATCAGCTTTCTGATAGTCAGCGCAAGGAACACTTGCTAGGTGAGGCAAACACAGCTCTCAGACAAAGGTTGGAAGAGTATCAAATAAATCAATTTCAACTGAATCCCAGTGGTGAAGATATGGGGTATGACCGTCATCCAGGTCAGCACCAAGGCGATGCTCTCTTTCAACCATTGGAGTGTGAGCCAACATTACAAATGGGATATCGACCTGATCCAGTATCAGTGATAACTGGAGGCCAGAGCATGAACAATTTCATGGGAGGATGGTTACCATGA 726 0.4477 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAELALIIFSTRGKLYEFCSTSSMLKTLERYQKCNYGAPEANASTKEALELSSQQEYLKLKARYEALQRFQRNLMGEDLGPLSSNELESLERQLDSSLKQIRSTRTQFMLDQLSDSQRKEHLLGEANTALRQRLEEYQINQFQLNPSGEDMGYDRHPGQHQGDALFQPLECEPTLQMGYRPDPVSVITGGQSMNNFMGGWLP 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03480 241 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Viun1g03480 241 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Viun1g03480 241 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Viun1g03480 241 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Viun1g03480 241 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Viun1g03480 241 Pfam K-box region 91 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Viun1g03480 241 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Viun1g03480 241 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Viun1g03480 241 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 167 - -
Viun1g03480 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Viun1g03480 241 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Viun1g03480 241 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Viun1g03480 241 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Viun1g03480 241 Coils Coil 126 146 - -
Viun1g03480 241 FunFam MADS-box transcription factor 1 13 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03480 Viun-Chr1 41593193 41597078 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03480 1 241 MADS-box Gene Family AT1G24260 69.512 5.65e-108 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Viun1g03480 K-box 1.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03480 - - gmx:547686 415.616