Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03476 ATGCCATCTGGTTTGGAGTACAACCTCGATGATCTGTTCCAAGAAGCTAAGAAGCGATGGCTCAAACCTGTCGAAGTGCTTTACATTTTACGGAATCACGACATGTGCGAGCTTACCCACCAGCCCCCTCATCAGCCAGCTGGCGGATCCCTGTATCTGTTTAATAGAAGAGTCACGCGTTACTTCCGCAAAGATGGTCATAACTGGAGGAAGAAAAGAGACGGAAGAACTGTGGGAGAAGCACATGAACGGCTCAAGGTTGGAAATGAAGAAATCCTAAACTGCTACTATGCACATGGAGAAGAGAACCGTTCTTTTCAGAGACGGAGCTATTGGATGTTGGAGCTGGAATATGAGCATATTGTTCTGGTGCATTATAGAGACACAAGTAAGGGGAAATCCAATTCTGAACCTTTCACACAATTTTCATCGAGTTCCTCTCGTGTTTTTAGTCAGAGTCAAAGCTTGTATACAGATCACAACCCAGGGACATCATCCATGTTTGGTGATTCATGTGAACCTAATCAAAAATTTCCTAGTCCTGGGTCTTTAGAAGTTACATCTGAAGCACAAGCCTTGCGCCAATTGGAAGAAGAGCTGAATATAAATGAGGACAGCTTCAATGAAAGGGTGATTTATAAAGATAAGTCTACTTTGTCTGGACCAAATGATCAAGGGCATCTTTTTGTTAGATATAATGGAAGACAAGATAACAGTTACACATACTGTGATCATGACTTCCCTAATGATTGTCCTGATGGAAATGAAAAAGATATATACTGGGCCGAGATGCTTGAAGCATGCAAGCCCTTACCTGTGACCAATTTACCAGATCAATATGGATATGAGGCTTTTGAAAATGAAGAGTCATTATTTTCTTTAGGAAGGGAAATGATTGCCAACATGGAAAACAATCAGTGGCCAAACTCCAACTGTAATTATGTTGAGAACTCTGTTTTTCCACCTCCTCAAGGCGACATTGGAGTCAAATTTCCTCTATGTTCTCGGGTAGAAAATCCAGTAACTACCTCTGACTACTGTGAAAATTTTTTTGACCAAACAAAAATTCAAGAACCCCTGGGTGTAGATTCAAGCTTGACTTTTGAACAGAAACAGAAATTTACAATTAGGGCAGTCTCCCCAGAATACTGCTATGCCAATGAAACTACAAAGGTTATCATTATTGGATCGTTTCTCTATCATCACTCGGATTCTACTTGGGCCTGTTTGTTTGATGATGTTGAAGTTCCTGCTGAGATTATTCAGGATGGCGTAATCAGTTGTGAAGCTCCATCCAATCTTCTTGGAAAGGTTAAGTTGTGCATTACTTCCGGAAATAGGGTGCCTTGCAGTGAAGTGAGTGAGTTTGAGTTTCGAAATAGGACTACTAGTTGCACTCGCTGTAATTCATTGGAAACAGAAGATGGTAGAAGTCCGGAAGATCTGCTATTACTTGTTCGATTTGCGGAGATGCTCCACTCTGCTTCATCTAAAAAGGATGACAGCACAGAATCTGGAAGTAACCTTTCAACAGAACAGAAAGATGGTGATGATTCATGGAGCCATATGATTGACACTCTTCTAGTTGGCACTGGAAAATCATCTGATACTGTTAACTGGCTTCTAGAAGAGCTGCTGAAGGATAAGCTGCAGCTCTGGCTCTCTAACCGATCCCATGAAAGAGATGAAGGGACAGACTGTTCTTTGTCCAAGAAAGAGCAGGGAATTATACACATGGTTTCTGGGTTGGGTTTTGAGTGGGCCCTGAACCCCATTCTCAGTTGCGGTGTGAATATAAATTTCCGTGACATCAATGGATGGACCGCCCTTCATTGGGCTGCAAAGTTTGGGAGGGAAAAAATGGTTGCTTCACTTATAGCTTCTGGTGCATCTGCTGGAGCGGTGACAGATCCAAGTTCACAAAATCCAAGCGGTGAAACTGCTGCATCTGTTGCAGCCTCCCATGGCCATAAGGGACTGGCAGGTTATCTTTCTGAGGTACAGCTAACGAGCCACTTATCATCCCTGACTTTGACAGCGAGTAAGCTTTCTGAAGGATCTTCTGAGCTCGAAGCCGAGTTAACTGTCCGCAGTGTCTCTAAAGAAAATATTGTGGCCGGTGAGGAGGATGTTTCACTAAAAGCTTCCTTGGATGCTGTCAGAAATGCATCTCAGGCAGCTGCACGGATACAAGATGCTTTTCGTGCATATTCTTTTAGAAAACGGAAAGAAAGAGAAGAAGCTATGGCTGCTGCTGCTGCGGCATGTCTAGATGGATACTGTATTGATCCTGCAGGTTGCAATGATGATAACATTTCAGTGCTTTCTGCCATGTCAAAACTTAATTCCCGGAGCTCGGGTGATTACAATTTAGCTGCCTTGTCGATTCAGAAGAGATATCGAGGTTGGAAAGGTCGCAAAGAATTCTTAGCATTGCGCCAGAAAGTAGTTAAGATACAGGCCATTGTGAGGGGTTACCAGGCTCGGAAGCAATACAAGATAATATTATGGGCAGTTGGAATCCTGAATAAGGTTGTGCTACGATGGAGGAGAAAACGCGTTGGTATAACTAGTGTCCGCCAAGAAATGGATTCAAATGAAGGAGAAAGTGATGATGAAGATTTTCTGAACGTCTTCCGAAAAGAGAAAGTAAATGGAACAATTGAGACGGCTTTGAAGCGGGTGCTTTCCATGGTCCGTCATGACGATGCTCGCCACCAATACAGGCGCTTGCTTTCGTTGTATCGTCAAGCCAAGACTAAACGTGAGAGTACAAGTGATGAAGCACCGTCATCAACTTCGGAAGAGGATCCTCTGAATATGGAAGAGGATGATTGGGATCTGTTATGGCAAAAATTATGTGCTTAG 2868 0.4306 MPSGLEYNLDDLFQEAKKRWLKPVEVLYILRNHDMCELTHQPPHQPAGGSLYLFNRRVTRYFRKDGHNWRKKRDGRTVGEAHERLKVGNEEILNCYYAHGEENRSFQRRSYWMLELEYEHIVLVHYRDTSKGKSNSEPFTQFSSSSSRVFSQSQSLYTDHNPGTSSMFGDSCEPNQKFPSPGSLEVTSEAQALRQLEEELNINEDSFNERVIYKDKSTLSGPNDQGHLFVRYNGRQDNSYTYCDHDFPNDCPDGNEKDIYWAEMLEACKPLPVTNLPDQYGYEAFENEESLFSLGREMIANMENNQWPNSNCNYVENSVFPPPQGDIGVKFPLCSRVENPVTTSDYCENFFDQTKIQEPLGVDSSLTFEQKQKFTIRAVSPEYCYANETTKVIIIGSFLYHHSDSTWACLFDDVEVPAEIIQDGVISCEAPSNLLGKVKLCITSGNRVPCSEVSEFEFRNRTTSCTRCNSLETEDGRSPEDLLLLVRFAEMLHSASSKKDDSTESGSNLSTEQKDGDDSWSHMIDTLLVGTGKSSDTVNWLLEELLKDKLQLWLSNRSHERDEGTDCSLSKKEQGIIHMVSGLGFEWALNPILSCGVNINFRDINGWTALHWAAKFGREKMVASLIASGASAGAVTDPSSQNPSGETAASVAASHGHKGLAGYLSEVQLTSHLSSLTLTASKLSEGSSELEAELTVRSVSKENIVAGEEDVSLKASLDAVRNASQAAARIQDAFRAYSFRKRKEREEAMAAAAAACLDGYCIDPAGCNDDNISVLSAMSKLNSRSSGDYNLAALSIQKRYRGWKGRKEFLALRQKVVKIQAIVRGYQARKQYKIILWAVGILNKVVLRWRRKRVGITSVRQEMDSNEGESDDEDFLNVFRKEKVNGTIETALKRVLSMVRHDDARHQYRRLLSLYRQAKTKRESTSDEAPSSTSEEDPLNMEEDDWDLLWQKLCA 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03476 955 ProSiteProfiles IQ motif profile. 789 818 IPR000048 GO:0005515
Viun1g03476 955 ProSiteProfiles IQ motif profile. 812 836 IPR000048 GO:0005515
Viun1g03476 955 ProSiteProfiles Ankyrin repeat region circular profile. 605 631 - -
Viun1g03476 955 ProSiteProfiles IQ motif profile. 723 752 IPR000048 GO:0005515
Viun1g03476 955 Pfam IQ calmodulin-binding motif 814 833 IPR000048 GO:0005515
Viun1g03476 955 Pfam IQ calmodulin-binding motif 792 809 IPR000048 GO:0005515
Viun1g03476 955 SUPERFAMILY Ankyrin repeat 576 667 IPR036770 -
Viun1g03476 955 MobiDBLite consensus disorder prediction 919 943 - -
Viun1g03476 955 SMART ANK_2a 644 673 IPR002110 GO:0005515
Viun1g03476 955 SMART ANK_2a 605 634 IPR002110 GO:0005515
Viun1g03476 955 MobiDBLite consensus disorder prediction 496 518 - -
Viun1g03476 955 SMART CG_1_2 12 130 IPR005559 GO:0003677
Viun1g03476 955 Pfam CG-1 domain 15 128 IPR005559 GO:0003677
Viun1g03476 955 Pfam Ankyrin repeats (3 copies) 588 665 IPR002110 GO:0005515
Viun1g03476 955 Gene3D - 789 836 - -
Viun1g03476 955 SMART iq_5 811 833 IPR000048 GO:0005515
Viun1g03476 955 SMART iq_5 788 810 IPR000048 GO:0005515
Viun1g03476 955 SMART iq_5 722 744 IPR000048 GO:0005515
Viun1g03476 955 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 789 839 IPR027417 -
Viun1g03476 955 ProSiteProfiles CG-1 DNA-binding domain profile. 9 135 IPR005559 GO:0003677
Viun1g03476 955 Pfam IPT/TIG domain 375 446 IPR002909 -
Viun1g03476 955 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 9 921 - -
Viun1g03476 955 FunFam Calmodulin-binding transcription activator 4 isoform A 485 670 - -
Viun1g03476 955 Gene3D Immunoglobulins 369 464 IPR013783 -
Viun1g03476 955 FunFam Calmodulin-binding transcription activator 2 788 836 - -
Viun1g03476 955 SUPERFAMILY E set domains 375 459 IPR014756 -
Viun1g03476 955 Gene3D - 472 671 IPR036770 -
Viun1g03476 955 ProSiteProfiles Ankyrin repeat profile. 605 637 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03476 Viun-Chr1 41572832 41582921 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03476 261 925 CAMTA Transcription Factor Family AT1G67310 53.055 0.0 606
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Viun1g03476 CG-1 2.5e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03476 K21596 - gmx:100791430 1396.72