Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03475 ATGCCATCTGGTTTGGAGTACAACCTCGATGATCTGTTCCAAGAAGCTAAGAAGCGATGGCTCAAACCTGTCGAAGTGCTTTACATTTTACGGAATCACGACATGTGCGAGCTTACCCACCAGCCCCCTCATCAGCCAGCTGGCGGATCCCTGTATCTGTTTAATAGAAGAGTCACGCGTTACTTCCGCAAAGATGGTCATAACTGGAGGAAGAAAAGAGACGGAAGAACTGTGGGAGAAGCACATGAACGGCTCAAGGTTGGAAATGAAGAAATCCTAAACTGCTACTATGCACATGGAGAAGAGAACCGTTCTTTTCAGAGACGGAGCTATTGGATGTTGGAGCTGGAATATGAGCATATTGTTCTGGTGCATTATAGAGACACAAGTAAGGGGAAATCCAATTCTGAACCTTTCACACAATTTTCATCGAGTTCCTCTCGTGTTTTTAGTCAGAGTCAAAGCTTGTATACAGATCACAACCCAGGGACATCATCCATGTTTGGTGATTCATGTGAACCTAATCAAAAATTTCCTAGTCCTGGGTCTTTAGAAGTTACATCTGAAGCACAAGCCTTGCGCCAATTGGAAGAAGAGCTGAATATAAATGAGGACAGCTTCAATGAAAGGGTGATTTATAAAGATAAGTCTACTTTGTCTGGACCAAATGATCAAGGGCATCTTTTTGTTAGATATAATGGAAGACAAGATAACAGTTACACATACTGTGATCATGACTTCCCTAATGATTGTCCTGATGGAAATGAAAAAGATATATACTGGGCCGAGATGCTTGAAGCATGCAAGCCCTTACCTGTGACCAATTTACCAGATCAATATGGATATGAGGCTTTTGAAAATGAAGAGTCATTATTTTCTTTAGGAAGGGAAATGATTGCCAACATGGAAAACAATCAGTGGCCAAACTCCAACTGTAATTATGTTGAGAACTGTCCCTTATCTCCAGCTGTTTTTCCACCTCCTCAAGGCGACATTGGAGTCAAATTTCCTCTATGTTCTCGGGTAGAAAATCCAGTAACTACCTCTGACTACTGTGAAAATTTTTTTGACCAAACAAAAATTCAAGAACCCCTGGGTGTAGATTCAAGCTTGACTTTTGAACAGAAACAGAAATTTACAATTAGGGCAGTCTCCCCAGAATACTGCTATGCCAATGAAACTACAAAGGTTATCATTATTGGATCGTTTCTCTATCATCACTCGGATTCTACTTGGGCCTGTTTGTTTGATGATGTTGAAGTTCCTGCTGAGATTATTCAGGATGGCGTAATCAGTTGTGAAGCTCCATCCAATCTTCTTGGAAAGGTTAAGTTGTGCATTACTTCCGGAAATAGGGTGCCTTGCAGTGAAGTGAGTGAGTTTGAGTTTCGAAATAGGACTACTAGTTGCACTCGCTGTAATTCATTGGAAACAGAAGATGGTAGAAGTCCGGAAGATCTGCTATTACTTGTTCGATTTGCGGAGATGCTCCACTCTGCTTCATCTAAAAAGGATGACAGCACAGAATCTGGAAGTAACCTTTCAACAGAACAGAAAGATGGTGATGATTCATGGAGCCATATGATTGACACTCTTCTAGTTGGCACTGGAAAATCATCTGATACTGTTAACTGGCTTCTAGAAGAGCTGCTGAAGGATAAGCTGCAGCTCTGGCTCTCTAACCGATCCCATGAAAGAGATGAAGGGACAGACTGTTCTTTGTCCAAGAAAGAGCAGGGAATTATACACATGGTTTCTGGGTTGGGTTTTGAGTGGGCCCTGAACCCCATTCTCAGTTGCGGTGTGAATATAAATTTCCGTGACATCAATGGATGGACCGCCCTTCATTGGGCTGCAAAGTTTGGGAGGGAAAAAATGGTTGCTTCACTTATAGCTTCTGGTGCATCTGCTGGAGCGGTGACAGATCCAAGTTCACAAAATCCAAGCGGTGAAACTGCTGCATCTGTTGCAGCCTCCCATGGCCATAAGGGACTGGCAGGTTATCTTTCTGAGGTACAGCTAACGAGCCACTTATCATCCCTGACTTTGACAGCGAGTAAGCTTTCTGAAGGATCTTCTGAGCTCGAAGCCGAGTTAACTGTCCGCAGTGTCTCTAAAGAAAATATTGTGGCCGGTGAGGAGGATGTTTCACTAAAAGCTTCCTTGGATGCTGTCAGAAATGCATCTCAGGCAGCTGCACGGATACAAGATGCTTTTCGTGCATATTCTTTTAGAAAACGGAAAGAAAGAGAAGAAGCTATGGCTGCTGCTGCTGCGGCATGTCTAGATGGATACTGTATTGATCCTGCAGGTTGCAATGATGATAACATTTCAGTGCTTTCTGCCATGTCAAAACTTAATTCCCGGAGCTCGGGTGATTACAATTTAGCTGCCTTGTCGATTCAGAAGAGATATCGAGGTTGGAAAGGTCGCAAAGAATTCTTAGCATTGCGCCAGAAAGTAGTTAAGATACAGGCCATTGTGAGGGGTTACCAGGCTCGGAAGCAATACAAGATAATATTATGGGCAGTTGGAATCCTGAATAAGGTTGTGCTACGATGGAGGAGAAAACGCGTTGGTATAACTAGTGTCCGCCAAGAAATGGATTCAAATGAAGGAGAAAGTGATGATGAAGATTTTCTGAACGTCTTCCGAAAAGAGAAAGTAAATGGAACAATTGAGACGGCTTTGAAGCGGGTGCTTTCCATGGTCCGTCATGACGATGCTCGCCACCAATACAGGCGCTTGCTTTCGTTGTATCGTCAAGCCAAGACTAAACGTGAGAGTACAAGTGATGAAGCACCGTCATCAACTTCGGAAGAGGATCCTCTGAATATGGAAGAGGATGATTGGGATCTGTTATGGCAAAAATTATGTGCTTAG 2883 0.4311 MPSGLEYNLDDLFQEAKKRWLKPVEVLYILRNHDMCELTHQPPHQPAGGSLYLFNRRVTRYFRKDGHNWRKKRDGRTVGEAHERLKVGNEEILNCYYAHGEENRSFQRRSYWMLELEYEHIVLVHYRDTSKGKSNSEPFTQFSSSSSRVFSQSQSLYTDHNPGTSSMFGDSCEPNQKFPSPGSLEVTSEAQALRQLEEELNINEDSFNERVIYKDKSTLSGPNDQGHLFVRYNGRQDNSYTYCDHDFPNDCPDGNEKDIYWAEMLEACKPLPVTNLPDQYGYEAFENEESLFSLGREMIANMENNQWPNSNCNYVENCPLSPAVFPPPQGDIGVKFPLCSRVENPVTTSDYCENFFDQTKIQEPLGVDSSLTFEQKQKFTIRAVSPEYCYANETTKVIIIGSFLYHHSDSTWACLFDDVEVPAEIIQDGVISCEAPSNLLGKVKLCITSGNRVPCSEVSEFEFRNRTTSCTRCNSLETEDGRSPEDLLLLVRFAEMLHSASSKKDDSTESGSNLSTEQKDGDDSWSHMIDTLLVGTGKSSDTVNWLLEELLKDKLQLWLSNRSHERDEGTDCSLSKKEQGIIHMVSGLGFEWALNPILSCGVNINFRDINGWTALHWAAKFGREKMVASLIASGASAGAVTDPSSQNPSGETAASVAASHGHKGLAGYLSEVQLTSHLSSLTLTASKLSEGSSELEAELTVRSVSKENIVAGEEDVSLKASLDAVRNASQAAARIQDAFRAYSFRKRKEREEAMAAAAAACLDGYCIDPAGCNDDNISVLSAMSKLNSRSSGDYNLAALSIQKRYRGWKGRKEFLALRQKVVKIQAIVRGYQARKQYKIILWAVGILNKVVLRWRRKRVGITSVRQEMDSNEGESDDEDFLNVFRKEKVNGTIETALKRVLSMVRHDDARHQYRRLLSLYRQAKTKRESTSDEAPSSTSEEDPLNMEEDDWDLLWQKLCA 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03475 960 MobiDBLite consensus disorder prediction 501 523 - -
Viun1g03475 960 FunFam Calmodulin-binding transcription activator 2 793 841 - -
Viun1g03475 960 SMART CG_1_2 12 130 IPR005559 GO:0003677
Viun1g03475 960 Gene3D Immunoglobulins 374 469 IPR013783 -
Viun1g03475 960 ProSiteProfiles Ankyrin repeat region circular profile. 610 636 - -
Viun1g03475 960 ProSiteProfiles IQ motif profile. 728 757 IPR000048 GO:0005515
Viun1g03475 960 Pfam CG-1 domain 15 128 IPR005559 GO:0003677
Viun1g03475 960 ProSiteProfiles IQ motif profile. 794 823 IPR000048 GO:0005515
Viun1g03475 960 ProSiteProfiles CG-1 DNA-binding domain profile. 9 135 IPR005559 GO:0003677
Viun1g03475 960 SUPERFAMILY E set domains 380 464 IPR014756 -
Viun1g03475 960 SUPERFAMILY Ankyrin repeat 581 672 IPR036770 -
Viun1g03475 960 SMART iq_5 727 749 IPR000048 GO:0005515
Viun1g03475 960 SMART iq_5 816 838 IPR000048 GO:0005515
Viun1g03475 960 SMART iq_5 793 815 IPR000048 GO:0005515
Viun1g03475 960 Gene3D - 794 841 - -
Viun1g03475 960 Gene3D - 477 676 IPR036770 -
Viun1g03475 960 ProSiteProfiles Ankyrin repeat profile. 610 642 IPR002110 GO:0005515
Viun1g03475 960 FunFam Calmodulin-binding transcription activator 4 isoform A 490 675 - -
Viun1g03475 960 Pfam IPT/TIG domain 380 451 IPR002909 -
Viun1g03475 960 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 794 844 IPR027417 -
Viun1g03475 960 ProSiteProfiles IQ motif profile. 817 841 IPR000048 GO:0005515
Viun1g03475 960 SMART ANK_2a 610 639 IPR002110 GO:0005515
Viun1g03475 960 SMART ANK_2a 649 678 IPR002110 GO:0005515
Viun1g03475 960 MobiDBLite consensus disorder prediction 924 948 - -
Viun1g03475 960 Pfam IQ calmodulin-binding motif 797 814 IPR000048 GO:0005515
Viun1g03475 960 Pfam IQ calmodulin-binding motif 819 838 IPR000048 GO:0005515
Viun1g03475 960 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 9 925 - -
Viun1g03475 960 Pfam Ankyrin repeats (3 copies) 593 670 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03475 Viun-Chr1 41572832 41582923 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03475 261 930 CAMTA Transcription Factor Family AT1G67310 52.367 0.0 600
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Viun1g03475 CG-1 2.5e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03475 K21596 - gmx:100791430 1389.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03475 1 41572832 41582923 Viun3g02236 3 19179033 19196057 PCT