Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03470 ATGATGGAGTGGAATACAAAATCTCTCGGACAATGGGACTGGGAGCACTTATTCTTCTTCAATACAAAAGCAACAGAAAATCCGAGGTTACCAACAACTGATTGTAGCAGCAACGAAGCAGATCGAGAAATCAATGTTGGGGTGTTTTATCCATCAGGTGGGAGTGCATGTTCTGGGTCTGAACTAGTACATGCTTCTTCACCAAGGAGCTCAAAATCAGCTTCCAACAATTCACTGTCAAATGGGGATAGCAAGGCATCGGTGTTGACTCTGGAAGGTTCTCAGGATGATTCCACTGGGAAGAAAGAACTGTGCCCAGTTGAAACTTCTCAATCAGCAGTTCCTTCTCCGGTCTCTGGTGAACCTCTGCTAACTCTGAAGCTTGGAAAAAGGTTGTACTTTGAGGATGTATGCGCAGGAAGTGATTCCAAGAAACCCTCTTTTGAGGTTCCAATTTCTTCAGGAAAGAAATATAAAACCAGTGGTCAGAATTTGCAGCATCCAAGCTGCCAGGTGGAAGGTTGTGGCCTTGACCTTTCTTCTGCTAAAGATTACCATCGCAAACACAGAGTGTGTGAAGCTCATTCCAAATCCCCTAAGGTGCTTGTAGCTGGTTTGGAGCGCCGGTTTTGCCAGCAATGTAGCAGGTTCCATGCTCTGTCAGAGTTTGATGACAAAAAAAGAAGCTGCAGAAAACGTCTCTCAGATCATAATGCAAGGCGTCGCAAACCACAGCCTGACTCAGTCCAGTTAAATCCATCAGCTTTGTCTTCGTCGCCTTATGATGGGAGGCAAATGATGAGCCCATTTGCATTTTCAAGAAGTGCTACAAACATGGTCTGGCAGGATATGCACAGCAGCAAGCTCCCCCAGACAAAAGATTTTCTTCCGAAGCCCGCAAAAGGCTTCGATAAGATACCCAGTATTGTGTCTATGTTTTCTGATGATAACAGTGGCCTTCTAACATCCAGAAGTATAGCAGCTAAGACTATTGTTCCAGGTTTAGAAGATCCCAATTCCATTAGTTCGTGTGATCCGAATGGTGCACAAGATGTTAACCGTGCTCTCTCTCTTCTGTCAAGCAATTCATGGGGTCCATATGAGACTAAGTTCTTATCCCTGGAACGCTCCTCTCGAACAAGTGGCATTAATCAGTCTATGACACACTCGATGACGCACCAGCAACAGCGTTTACCACTTGCTTCCTCTTCAGAATATTGGCACACTGATCATCAACAACAACCATCCCCTTCCACCATGAGCATGTGTATCTCATTCTCAGACTGTGATGCCAACAATCGCTTTCAAGACTTTCAGCTGTTGAGTGCACCCTATGACTCGCCTTTTCCATGCAACCATCTGGAATGA 1368 0.4518 MMEWNTKSLGQWDWEHLFFFNTKATENPRLPTTDCSSNEADREINVGVFYPSGGSACSGSELVHASSPRSSKSASNNSLSNGDSKASVLTLEGSQDDSTGKKELCPVETSQSAVPSPVSGEPLLTLKLGKRLYFEDVCAGSDSKKPSFEVPISSGKKYKTSGQNLQHPSCQVEGCGLDLSSAKDYHRKHRVCEAHSKSPKVLVAGLERRFCQQCSRFHALSEFDDKKRSCRKRLSDHNARRRKPQPDSVQLNPSALSSSPYDGRQMMSPFAFSRSATNMVWQDMHSSKLPQTKDFLPKPAKGFDKIPSIVSMFSDDNSGLLTSRSIAAKTIVPGLEDPNSISSCDPNGAQDVNRALSLLSSNSWGPYETKFLSLERSSRTSGINQSMTHSMTHQQQRLPLASSSEYWHTDHQQQPSPSTMSMCISFSDCDANNRFQDFQLLSAPYDSPFPCNHLE 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03470 455 ProSiteProfiles Zinc finger SBP-type profile. 167 244 IPR004333 GO:0003677
Viun1g03470 455 Pfam SBP domain 170 243 IPR004333 GO:0003677
Viun1g03470 455 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 60 418 IPR044817 GO:0003677
Viun1g03470 455 MobiDBLite consensus disorder prediction 245 262 - -
Viun1g03470 455 MobiDBLite consensus disorder prediction 60 118 - -
Viun1g03470 455 Gene3D - 160 231 IPR036893 GO:0003677|GO:0005634
Viun1g03470 455 FunFam Squamosa promoter-binding-like protein 14 161 231 - -
Viun1g03470 455 MobiDBLite consensus disorder prediction 60 95 - -
Viun1g03470 455 MobiDBLite consensus disorder prediction 104 118 - -
Viun1g03470 455 MobiDBLite consensus disorder prediction 234 262 - -
Viun1g03470 455 SUPERFAMILY SBT domain 168 249 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03470 Viun-Chr1 41554480 41557492 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03470 2 364 SBP-box Gene Family AT5G43270 39.687 1.37e-59 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Viun1g03470 SBP 6.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03470 - - gmx:100796013 711.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03470 1 41554480 41557492 Viun1g03470 1 41554480 41557492 ECH