LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun1g03451	ATGGTGAAGTACTCCAGAGAACCTGAAAATCCCACCAAGTCTTGCAAGGCAAGGGGCGCAGACCTCAGAGTGCATTTCAAGAACACTAGGGAGACTGCATTTGCCATCAGGAAGTTGCCTCTGGTTAAAGCTAAAAGATACTTGGAGGATGTGTTGGCCCACAAACAAGCTATCCCTTTCCGACGGTTTTGCAGAGGTGTTGGGAGGACAGCTCAGGCCAAAAACAGACACTCCAATGGACAAGGACGCTGGCCCGTCAAATCAGCTAAATTCATCCTGGATTTGCTGAAGAATGCCGAGAGTAATGCTGAAGTGAAAGGTTTGGATGTAGATGCTCTCTATATTTCTCATATCCAGGTTAATCAAGCACAGAAGCAAAGACGCCGCACCTACAGAGCCCATGGAAGAATCAACCCTTATATGTCATCTCCCTGCCATATTGAGCTGATATTATCTGAGAAGGAAGAGCCTGTGAAGAAAGAGCCGGAGACACAATTGGCAACTAGCAAGAAGAAGGGTGCTCTTCGTAGTGGGGCTTCATCTTAA	546	0.4707	MVKYSREPENPTKSCKARGADLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKKKGALRSGASS	181

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun1g03451	181	ProSitePatterns	Ribosomal protein L22 signature.	127	151	IPR018260	GO:0003735\|GO:0005840\|GO:0006412
	Viun1g03451	181	Pfam	Ribosomal protein L22p/L17e	17	152	IPR001063	GO:0003735\|GO:0005840\|GO:0006412
	Viun1g03451	181	PANTHER	60S RIBOSOMAL PROTEIN L17	1	173	IPR005721	GO:0003735\|GO:0006412\|GO:0015934
	Viun1g03451	181	FunFam	60S ribosomal protein L17	1	175	-	-
	Viun1g03451	181	NCBIfam	50S ribosomal protein L22	4	154	IPR005721	GO:0003735\|GO:0006412\|GO:0015934
	Viun1g03451	181	Gene3D	Ribosomal protein L22/L17	1	180	IPR036394	GO:0003735\|GO:0005840\|GO:0006412
	Viun1g03451	181	SUPERFAMILY	Ribosomal protein L22	1	154	IPR036394	GO:0003735\|GO:0005840\|GO:0006412
	Viun1g03451	181	MobiDBLite	consensus disorder prediction	154	181	-	-
	Viun1g03451	181	CDD	Ribosomal_L22	15	151	IPR001063	GO:0003735\|GO:0005840\|GO:0006412
	Viun1g03451	181	Hamap	50S ribosomal protein L22 [rplV].	2	154	IPR005721	GO:0003735\|GO:0006412\|GO:0015934

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun1g03451	Viun-Chr1	41455956	41458535	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun1g03451	1	174	Cytoplasmic Ribosomal Protein Gene Family	AT1G27400	90.805	3.31e-119	333

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun1g03451	K02880		-	gmx:100305777	348.977

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Viun1g03451	1	41455956	41458535	Viun3g02264	3	19743704	19746858	PCT