Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03445 ATGTGGATAATGGATCTTGCCGAGGTTGAAGAAAATCTTTTTGCAGCAAGCGATGCCAAGTTACATGGAGAAATGTGCAATTCTCTTTCTGCAATACTCTGCAAGATATTGTTATTATTTCCTTCTTTAGAAGCATCTAGGCCTAGGAGCAAATCTGGAATTCAGGCATTATGCTCATTGCATGTAGCCTTAGAAAAGGCAAAGAATGTTCTTCAGCACTGCTCAGAATGTAGTAAACTTTACTTGGCTATAACCGCGGATTCTGTTCTTCTAAAATTTGAAAAGGCTAAATGTGCTCTTGAGGATAGTCTTAAAGGGGTAGAAGATATTGTTCCTCAATCTATTGGTTGTCAGATTGATGAAATTGTGAATGAACTTGCAAATACGGTATTTGCACTTGATCCATCAGAGAAGCAAGTCGGGGATGATTTAATTGCATTGCTTCAAAAGGGAAGAAAGCTTAGTGACTCTAATGACAGTAGTGAACTGGAATGCTTTCATCTAGCTGCTACTACTATTGGAATCACTTCTTCAAGAGCCGCACTTGCAGAAAGAAGATCTCTTAAAAAACTCATTGAAAGAGCTCGAGCTGAGGATGACAAGCGGAAAGAATCAATTATTGCTTACCTTTTACACCTTATGAGGAAATATTCCAAATTATTTAGAAGTGAGTTCTCTGATGAATATGATTCTCAGGGTTCTCAGCCTTGTTCTCCCACTGTTCAGAGATCTCTTGAGGATGGCATTACTGGTGGTCATTGTCATGTCTTTGACAGACAGCTTTCAAAACTTAGTTCCTTTAACTTTAAGTCAAGTAATAGGGAATCAGGGCAGATGCTCGTTTTGCCTGAAGAGTTACGATGCCCAATATCTCTGCAACTTATGATTGACCCTGTTATAATTGCTTCTGGGCAAACATATGAAAGGGTTTGCATCGAGAAATGGTTCAGGGATGGGCACACGACCTGCCCAAAGACGCAACAGAAACTTTCACATCTTTCTTTGACTCCTAATTACTGTGTGAAGGGTCTTGTGGCTAGTTGGTGTGAACATAATGGAGTTCCTATTCCTGAAGGCCCTCCTGAATCTGTTGATTTTAACTACTGGAGATTGGCGTTATCAGATACTGAATCCACAAATTCAAGATCTGCAAACAGTGTTGGCTCTTGCAAGTTGAAGGGTGTCAAAGTTGTTCCTGTAGAAGAGAGTGGTATCTCAGAGGAAATGAGGGGGAATGCAGCTGAGAACTTTTCTGCACAAGAGGAAGATCATGAACGGTATCTTAGTTTTCTTAAAGTCTTGTCAGAAGGGGACGATTGGAAGGGGAAGTGCAAAATAGTTGAACAGTTGAGGCTGTTGCTGCGGGATGATGAGGAAGCCAGGATTTTTATGGGGGCTAATGGATTTGTTGATGCACTTATGCAGTTTCTGCAATCAGCCATGCACGAAAGGAATGCGACGGCTCTTGAAAATGGAGCCATGGCTCTGTTCAACCTGGCTGTGAATAACAACAGAAATAAGGAAATTATGATATCAGCAGGAATCTTGTCGCTGTTGGAAGAAATGATATCAAAAACTAGTTCCCATGGTTGTGTAGCCGCCCTGTATCTGAATCTTTCTTGCCTTGAAGAAGCCAAGGACGTGATTGGTACGAGTCAGGCTGTCCAGTTCCTTATCCAGATTCTTCACGCCAGGACAGAAGTCCAGTGCAAGATAGATTCCCTCCATGCACTCTATAACCTTTCTACATTGTCCTCCAACATTCCACATCTCCTTTCATCTGGCATCATTGAAACCCTACAATCCCTTCTTGCAAACCAGGGTGATTGCGCTTTGACAGAAAAATGCCTAGCTGTTTTGATAAATTTGGCTGTTTCTCCACCAGGAAGAGAGCAAATGATTTTGGCTCCTGCACTCATAAGTGCCTTGGCTTCCACGCTGGATACCGGTAAGCTCTCGGAGCAGGAGCAAGCTACCTCTTGTCTTCTAATTTTGTGTAACAGGAGTGAGGAATGCTGTGAGATGGTCCTGCAAGAAGGCGTTATCCCTGCGTTGGTGGCATTATCGGTAAATGGAACATCAAGAGGAAGAGAAAAGGCTCAGAAACTTTTGACAGTCTTCCGAGAGCAGCGACAACGGGACCATTCACCTGTTAACACAAATCAATGTGAACCTGAAAGTAGTGATTTCTCTATGCCTCCTCCTGAAACGAAACCGCTATGTAAATCAATATCCAGAAAAAAGGTGGTAGGGAAAGCTTTTAGATTTCTCTGGAAAAGCAAGAGCTATTCTGTTTCCCAGTGTTAA 2307 0.4218 MWIMDLAEVEENLFAASDAKLHGEMCNSLSAILCKILLLFPSLEASRPRSKSGIQALCSLHVALEKAKNVLQHCSECSKLYLAITADSVLLKFEKAKCALEDSLKGVEDIVPQSIGCQIDEIVNELANTVFALDPSEKQVGDDLIALLQKGRKLSDSNDSSELECFHLAATTIGITSSRAALAERRSLKKLIERARAEDDKRKESIIAYLLHLMRKYSKLFRSEFSDEYDSQGSQPCSPTVQRSLEDGITGGHCHVFDRQLSKLSSFNFKSSNRESGQMLVLPEELRCPISLQLMIDPVIIASGQTYERVCIEKWFRDGHTTCPKTQQKLSHLSLTPNYCVKGLVASWCEHNGVPIPEGPPESVDFNYWRLALSDTESTNSRSANSVGSCKLKGVKVVPVEESGISEEMRGNAAENFSAQEEDHERYLSFLKVLSEGDDWKGKCKIVEQLRLLLRDDEEARIFMGANGFVDALMQFLQSAMHERNATALENGAMALFNLAVNNNRNKEIMISAGILSLLEEMISKTSSHGCVAALYLNLSCLEEAKDVIGTSQAVQFLIQILHARTEVQCKIDSLHALYNLSTLSSNIPHLLSSGIIETLQSLLANQGDCALTEKCLAVLINLAVSPPGREQMILAPALISALASTLDTGKLSEQEQATSCLLILCNRSEECCEMVLQEGVIPALVALSVNGTSRGREKAQKLLTVFREQRQRDHSPVNTNQCEPESSDFSMPPPETKPLCKSISRKKVVGKAFRFLWKSKSYSVSQC 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03445 768 SMART Ubox_2 285 348 IPR003613 GO:0004842|GO:0016567
Viun1g03445 768 PANTHER U BOX DOMAIN-CONTAINING 24 707 - -
Viun1g03445 768 Coils Coil 178 198 - -
Viun1g03445 768 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 468 514 IPR000225 GO:0005515
Viun1g03445 768 Pfam Armadillo-like 492 645 IPR006911 -
Viun1g03445 768 Pfam U-box domain 283 352 IPR003613 GO:0004842|GO:0016567
Viun1g03445 768 FunFam RING-type E3 ubiquitin transferase 281 355 - -
Viun1g03445 768 SUPERFAMILY RING/U-box 271 357 - -
Viun1g03445 768 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 282 355 IPR013083 -
Viun1g03445 768 CDD RING-Ubox_PUB 283 335 IPR045210 -
Viun1g03445 768 SUPERFAMILY ARM repeat 430 709 IPR016024 -
Viun1g03445 768 Gene3D - 409 725 IPR011989 -
Viun1g03445 768 ProSiteProfiles U-box domain profile. 281 355 IPR003613 GO:0004842|GO:0016567
Viun1g03445 768 MobiDBLite consensus disorder prediction 711 737 - -
Viun1g03445 768 SMART arm_5 542 583 IPR000225 GO:0005515
Viun1g03445 768 SMART arm_5 503 541 IPR000225 GO:0005515
Viun1g03445 768 SMART arm_5 457 501 IPR000225 GO:0005515
Viun1g03445 768 SMART arm_5 626 667 IPR000225 GO:0005515
Viun1g03445 768 SMART arm_5 669 709 IPR000225 GO:0005515
Viun1g03445 768 SMART arm_5 584 625 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03445 Viun-Chr1 41420214 41425217 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03445 4 767 U-box Gene Family AT1G67530 64.602 0.0 991
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03445 - - gmx:100804344 1269.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03445 1 41420214 41425217 Viun1g03445 1 41420214 41425217 ECH
Viun1g03445 1 41420214 41425217 Viun3g02275 3 20052670 20057491 PCT