Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03442 ATGATGGTGTTGGCAAATTCTGGTTCGGGCCTTCGGAGACAGGTTTTTCCCGTTGATTATGAAACGGAGCTTTCGCAGCGTCTCGTAGAAGCGGCGTATTACGGCGACACCGACGCTGCGTTTGACTGTGTCGCCAATCCCTCTGTCGACGTTAACTTTGTCGGAACGGTGTCGTTTAAGTCCAAAACGACGGAGATCGTGCTGCAGGACGAGTCGCCTCACCGAGTTAACTCGGCGTACGAGGAGTTCAAGACCGAGCTCACCGCTCTGTTCCTGGCCGCGCACACAGGGAATTTGACACTTCTTCGGAAGCTTCTGAATGTTGGAGCTAATGTAAATATGAGAATGTTCCGGGGCTATGCCACAACAGCGTCAGTGAGAGAAGGGCATCTAAAAGTGTTGGAGGTCCTTATCAATGCTGGGGCATCACAACTTGCATGCGAGGAGGCTCTAATGGAAGCAAGCTATTTGGGGAGGGCCAGATTTGTTGAATTACTCATGCAATCCAACATGATTCGTCCTCAGGTTGCAGTTCATGCCCTTGTCTCTGCCTGTTGCAGAGGCTTCGTTGAGGTTGTTGATGTACTCATCAAGCATGGAGTGGATGCCAATGCAATTGATAGGACTTTGCTTCAATCTTCAAAGCCATTTCTTCATGCTAATGTTGATTGCAATGCATTATTTGCTGCTGTGGTCAGCAGGCAGATTGATGTTGTTAGATTACTGTTGCAGGTTGGAGTGAGGCTTGACATGAAGGTCAAACTGGGGGCATGGTCCTGGGACACAGATACAGGAGAAGAATTTCGTGTAGGTGTTGGACTAGCTGAGGCTTATCCAATCACTTGGTGTGCCGTGGAGTATTTTGAATCCACCGGTGCTATATTGCATATGCTGCTCTGCCATCTCTCACCTAATAGCTTACACATTGGGAGGAGTCTCTTGCACCATGCTGTCATTTGTAACAACGAAAAAGCTGTAAATATTCTTCTAAACAACGGTGCTGATGCAGAAGTGACTGTGAAAACCACTGAAGAAACCAAGGAGCACCCTCTTCACATTGCTGCACGGGTTGGATCATGCAACATTCTTCAGTGCCTGATTAATGGTGGCTGTAACTTGGATTCCCAGACAAAATGTGGAGATACAGCACTGATGATCTGCACAAGGAACAAACATGAGAAGTGCCTTGGGGTGTTAGCATCAGCAGGTGCTGATTTGGGAATTGTAAATTCATCTGATCACTGTGCAACTTCAATTGCAAACTTTGTCCAGTGGACTAAAGTCTACCATAAAGTGATATCAGACATAATCAGAGCCGGGAAGGTTGTTAAATCAAGCAATGCCGCTAGATTCTCCGCTTTGTTATTTGCAACTCGTGCAAATGACATAGAGGGCTTGAAGAAACTCATTGAAAATGGGAACATGAATCTGAATGAGCAAAATGCAAATGGATTTTCTGCTGCTATGATAGCTGCAGTAGTGTGTAACGTGGAGGCTTTCAAGTTGCTTCTTTATGCAGGGGCTGACGTGACTACGCTTAAAAACAAGTATGGTTTGACGGCACTTAACCTCGTAGATGTGAGCCAAAATAGTGAAGTGTTCCACAAGGTGATGCTTGAATATGCACTCAAAAGGGTAGACGATGGTTCAATTGAGGCAAACCCTCTCCACCGTGCAGCATGCTACGGAGACACAAACATTGTTCACAAACTACTAAAAGAAGGGTACGATGTAAACGCTTTTGATGGTGAAGGATACACCCCTTTGATGTTAGCAGCAAGAGGGTGCCGTGGTGAAATGTGTGAGCTTTTGATCTCACATGGAGCCGAATGTGATATTGAGAACGAGAGACATGAGACAGCCCTTTCACTTTCCAGAGAAAATGGTGCAGGAAATGATGCTGAACGTGTGATTTTGGATGAGCTAGCTAGAAAACTGGTCTTGGGTGGAGCTGGTGTGAAGAAGCATACAAAGTGTGGCAAAGGTTCACCTCATGGTAAGTTGCTACAGATGATTGGTGCTGCTGGAATCTTACGTTGGGGAAAATCAAGTAAGAGAAATGTGATTTGTAAAGAGGCTGAGGTTGGACCTAGTGAGAAGTTTCGATGGAATCGTAGGAGGAAGTTTGATGTTGAGGAACCAGGATTGTTCTATGTTGTTACTACAAAAGGTAAACAGGTACATTTTGTGTGTGAAGGTGGGGTTGAAATGGCTGATTTGTGGGTAAGGGGGATTCAATTAGTAACTAGAGAAGCCATTTCTGGTAGAAGAGCTCGTGAGGTTTGA 2286 0.4558 MMVLANSGSGLRRQVFPVDYETELSQRLVEAAYYGDTDAAFDCVANPSVDVNFVGTVSFKSKTTEIVLQDESPHRVNSAYEEFKTELTALFLAAHTGNLTLLRKLLNVGANVNMRMFRGYATTASVREGHLKVLEVLINAGASQLACEEALMEASYLGRARFVELLMQSNMIRPQVAVHALVSACCRGFVEVVDVLIKHGVDANAIDRTLLQSSKPFLHANVDCNALFAAVVSRQIDVVRLLLQVGVRLDMKVKLGAWSWDTDTGEEFRVGVGLAEAYPITWCAVEYFESTGAILHMLLCHLSPNSLHIGRSLLHHAVICNNEKAVNILLNNGADAEVTVKTTEETKEHPLHIAARVGSCNILQCLINGGCNLDSQTKCGDTALMICTRNKHEKCLGVLASAGADLGIVNSSDHCATSIANFVQWTKVYHKVISDIIRAGKVVKSSNAARFSALLFATRANDIEGLKKLIENGNMNLNEQNANGFSAAMIAAVVCNVEAFKLLLYAGADVTTLKNKYGLTALNLVDVSQNSEVFHKVMLEYALKRVDDGSIEANPLHRAACYGDTNIVHKLLKEGYDVNAFDGEGYTPLMLAARGCRGEMCELLISHGAECDIENERHETALSLSRENGAGNDAERVILDELARKLVLGGAGVKKHTKCGKGSPHGKLLQMIGAAGILRWGKSSKRNVICKEAEVGPSEKFRWNRRRKFDVEEPGLFYVVTTKGKQVHFVCEGGVEMADLWVRGIQLVTREAISGRRAREV 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03442 761 Gene3D - 17 175 IPR036770 -
Viun1g03442 761 Coils Coil 463 483 - -
Viun1g03442 761 Gene3D - 176 262 IPR036770 -
Viun1g03442 761 SMART ANK_2a 222 251 IPR002110 GO:0005515
Viun1g03442 761 SMART ANK_2a 117 146 IPR002110 GO:0005515
Viun1g03442 761 SMART ANK_2a 449 479 IPR002110 GO:0005515
Viun1g03442 761 SMART ANK_2a 176 205 IPR002110 GO:0005515
Viun1g03442 761 SMART ANK_2a 551 580 IPR002110 GO:0005515
Viun1g03442 761 SMART ANK_2a 483 512 IPR002110 GO:0005515
Viun1g03442 761 SMART ANK_2a 379 408 IPR002110 GO:0005515
Viun1g03442 761 SMART ANK_2a 309 338 IPR002110 GO:0005515
Viun1g03442 761 SMART ANK_2a 584 613 IPR002110 GO:0005515
Viun1g03442 761 SMART ANK_2a 85 114 IPR002110 GO:0005515
Viun1g03442 761 SMART ANK_2a 346 375 IPR002110 GO:0005515
Viun1g03442 761 ProSiteProfiles Ankyrin repeat region circular profile. 551 582 - -
Viun1g03442 761 ProSiteProfiles Ankyrin repeat profile. 309 341 IPR002110 GO:0005515
Viun1g03442 761 SUPERFAMILY Ankyrin repeat 28 256 IPR036770 -
Viun1g03442 761 ProSiteProfiles Ankyrin repeat region circular profile. 584 616 - -
Viun1g03442 761 SUPERFAMILY Ankyrin repeat 310 636 IPR036770 -
Viun1g03442 761 ProSiteProfiles Ankyrin repeat profile. 483 515 IPR002110 GO:0005515
Viun1g03442 761 Gene3D - 305 428 IPR036770 -
Viun1g03442 761 Gene3D - 543 644 IPR036770 -
Viun1g03442 761 ProSiteProfiles Ankyrin repeat region circular profile. 85 115 - -
Viun1g03442 761 ProSiteProfiles Ankyrin repeat profile. 85 117 IPR002110 GO:0005515
Viun1g03442 761 ProSiteProfiles Ankyrin repeat profile. 346 378 IPR002110 GO:0005515
Viun1g03442 761 ProSiteProfiles Ankyrin repeat region circular profile. 309 338 - -
Viun1g03442 761 ProSiteProfiles Ankyrin repeat profile. 584 616 IPR002110 GO:0005515
Viun1g03442 761 ProSiteProfiles Ankyrin repeat profile. 551 583 IPR002110 GO:0005515
Viun1g03442 761 Pfam Ankyrin repeats (3 copies) 546 614 IPR002110 GO:0005515
Viun1g03442 761 Pfam Ankyrin repeats (3 copies) 314 408 IPR002110 GO:0005515
Viun1g03442 761 Gene3D - 429 542 IPR036770 -
Viun1g03442 761 PANTHER ANKYRIN REPEAT-CONTAINING 22 742 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03442 317 535 Ion Channels AT2G25600 28.270 1.37e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03442 - - gmx:100795638 1346.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03442 1 41405959 41411196 Viun1g03442 1 41405959 41411196 ECH