Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03425 ATGTATTTGTCGGAGAAACCGCGTCCAATCGACTTCTACAAGGAGGAAGGTGCGCGCGATATGATGATCGAGGTGGTCTCCAACGGCGAACTGCCGCCGCCGCCGCCGCACCACCCGCCGCCGATGATCCTCGGCGAGAGCAGCGGAGAAGACCCCGAGGTGGAGATCAAGGCCCCCAAGAAACGGGCGGAGACGTGGGTGCAGGACGAGACGCGCTCGCTCATTGGCCTCCGCCGCGAGATGGACGCGCTCTTCAATACCTCCAAGTCCAACAAGCACCTCTGGGAACAGATATCCTCCAAGATGAGGGAGAAGGGTTTTGATCGCTCTCCCACCATGTGCACCGATAAGTGGCGCAACCTGCTAAAGGAGTTCAAGAAGGCAAAGCACCAGGACCGTGGAGGGAGCGGCTCTGCTAAGATGTCGTATTACAAGGAGATTGATGAGATCCTCAGAGAGAGGAGCAAGAACGTGCAGTACAAGAGTCCCACTCCTCCGCCAAAGGTTGATTCTTTCATGCAGTTTGCTGATAAAGGTATTGATGATACTAGCATCTCTTTTGGGCCTGTAGAAGCTACTGGAAGACCAACACTAAATCTTGAGAGAAGTTTGGATCATGATGGGCATCCGCTTGCCATTACCACAGCTGATGCTGTTGCAGCTAGTGGAGTCCCTCCTTGGAATTGGAGAGAGACTTCTGGAAATGGTGGAGAAAGTCAGTCATGTTGTGGAAGGGTTATATCAGTTAAATGGTGTGATTATACAAGACGAATAGGTATTGATGGCACTCCAGAAGCCATCAAAGAGGCAATCAGGGCTGCTTTTAGGTTGAGAACTAAACGCGCATTTTGGTTGGAGGATGAGGACCAGATTATCCGAAGTATTGACCGTGAAATGCCTATTGGAAGTTATACTCTTCACCTTGATGAAGGAATGGCCATTAAATTATGTCTCTATGATGAGTCTGAGCACCTTCCTGTGCATACTGAAGATAAGGTATTTTACACTGAAAATGATTATCGTGATTTTCTGACCCGCCGGGGTTGGGTGTGTCTAAGAGAATTTGATGGATATAGAAATATTGACAATTTGGATGATCTTCGACCTGGTGCCATATATCGTGGTGTGAGTTGA 1134 0.4929 MYLSEKPRPIDFYKEEGARDMMIEVVSNGELPPPPPHHPPPMILGESSGEDPEVEIKAPKKRAETWVQDETRSLIGLRREMDALFNTSKSNKHLWEQISSKMREKGFDRSPTMCTDKWRNLLKEFKKAKHQDRGGSGSAKMSYYKEIDEILRERSKNVQYKSPTPPPKVDSFMQFADKGIDDTSISFGPVEATGRPTLNLERSLDHDGHPLAITTADAVAASGVPPWNWRETSGNGGESQSCCGRVISVKWCDYTRRIGIDGTPEAIKEAIRAAFRLRTKRAFWLEDEDQIIRSIDREMPIGSYTLHLDEGMAIKLCLYDESEHLPVHTEDKVFYTENDYRDFLTRRGWVCLREFDGYRNIDNLDDLRPGAIYRGVS 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03425 377 ProSiteProfiles Myb-like domain profile. 58 122 IPR001005 -
Viun1g03425 377 SMART sant 62 124 IPR001005 -
Viun1g03425 377 Gene3D - 66 128 - -
Viun1g03425 377 PANTHER FI21293P1 46 351 - -
Viun1g03425 377 FunFam trihelix transcription factor GT-1 66 128 - -
Viun1g03425 377 MobiDBLite consensus disorder prediction 27 62 - -
Viun1g03425 377 CDD GT1 64 129 - -
Viun1g03425 377 Pfam Myb/SANT-like DNA-binding domain 65 150 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03425 Viun-Chr1 41317286 41321865 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03425 20 376 Trihelix Transcription Factor Family AT3G25990 69.399 2.73e-180 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Viun1g03425 Myb_DNA-bind_4 2.5e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03425 - - ccaj:109807736 737.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03425 1 41317286 41321865 Viun1g03425 1 41317286 41321865 ECH