Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03424 ATGTATTTGTCGGAGAAACCGCGTCCAATCGACTTCTACAAGGAGGAAGGTGCGCGCGATATGATGATCGAGGTGGTCTCCAACGGCGAACTGCCGCCGCCGCCGCCGCACCACCCGCCGCCGATGATCCTCGGCGAGAGCAGCGGAGAAGACCCCGAGGTGGAGATCAAGGCCCCCAAGAAACGGGCGGAGACGTGGGTGCAGGACGAGACGCGCTCGCTCATTGGCCTCCGCCGCGAGATGGACGCGCTCTTCAATACCTCCAAGTCCAACAAGCACCTCTGGGAACAGATATCCTCCAAGATGAGGGAGAAGGGTTTTGATCGCTCTCCCACCATGTGCACCGATAAGTGGCGCAACCTGCTAAAGGAGTTCAAGAAGGCAAAGCACCAGGACCGTGGAGGGAGCGGCTCTGCTAAGATGTCGTATTACAAGGAGATTGATGAGATCCTCAGAGAGAGGAGCAAGAACGTGCAGTACAAGAGTCCCACTCCTCCGCCAAAGGTTGATTCTTTCATGCAGTTTGCTGATAAAGGTATTGATGATACTAGCATCTCTTTTGGGCCTGTAGAAGGTGGAGAAAGTCAGTCATGTTGTGGAAGGGTTATATCAGTTAAATGGTGTGATTATACAAGACGAATAGGTATTGATGGCACTCCAGAAGCCATCAAAGAGGCAATCAGGGCTGCTTTTAGGTTGAGAACTAAACGCGCATTTTGGTTGGAGGATGAGGACCAGATTATCCGAAGTATTGACCGTGAAATGCCTATTGGAAGTTATACTCTTCACCTTGATGAAGGAATGGCCATTAAATTATGTCTCTATGATGAGTCTGAGCACCTTCCTGTGCATACTGAAGATAAGGTATTTTACACTGAAAATGATTATCGTGATTTTCTGACCCGCCGGGGTTGGGTGTGTCTAAGAGAATTTGATGGATATAGAAATATTGACAATTTGGATGATCTTCGACCTGGTGCCATATATCGTGGTGTGAGTTGA 1002 0.495 MYLSEKPRPIDFYKEEGARDMMIEVVSNGELPPPPPHHPPPMILGESSGEDPEVEIKAPKKRAETWVQDETRSLIGLRREMDALFNTSKSNKHLWEQISSKMREKGFDRSPTMCTDKWRNLLKEFKKAKHQDRGGSGSAKMSYYKEIDEILRERSKNVQYKSPTPPPKVDSFMQFADKGIDDTSISFGPVEGGESQSCCGRVISVKWCDYTRRIGIDGTPEAIKEAIRAAFRLRTKRAFWLEDEDQIIRSIDREMPIGSYTLHLDEGMAIKLCLYDESEHLPVHTEDKVFYTENDYRDFLTRRGWVCLREFDGYRNIDNLDDLRPGAIYRGVS 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03424 333 ProSiteProfiles Myb-like domain profile. 58 122 IPR001005 -
Viun1g03424 333 SMART sant 62 124 IPR001005 -
Viun1g03424 333 MobiDBLite consensus disorder prediction 27 53 - -
Viun1g03424 333 PANTHER FI21293P1 46 307 - -
Viun1g03424 333 CDD GT1 64 129 - -
Viun1g03424 333 Gene3D - 66 128 - -
Viun1g03424 333 Pfam Myb/SANT-like DNA-binding domain 65 150 IPR044822 -
Viun1g03424 333 FunFam trihelix transcription factor GT-1 66 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03424 Viun-Chr1 41317283 41321865 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03424 20 332 Trihelix Transcription Factor Family AT3G25990 61.096 1.84e-147 418
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Viun1g03424 Myb_DNA-bind_4 2e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03424 - - ccaj:109807736 627.476