Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03414 ATGGATAATGGGTGTTTCTCTTCCCCTCGACGTGATTTCCCTGCTGGTCTGCGAGTTCTTGTTGTGGATGATGATCCTACGTGGCTCAAGATCCTTGAGAAGATGCTCAAGAAGTGCAATTATGAAGTGACTACATGCTGTTTAGCAAGGCATGCTCTAAACTTGCTTCGTGAAAGGAAGGATGGATATGATATAGTGATCAGCGATGTAAACATGCCTGACATGGATGGTTTTAAACTTCTTGAGCATGTTGGGCTTGAGATGGATCTTCCTGTGATTATGATGTCTGTGGATGGGGAAACAAGCAGGGTCATGAAAGGTGTTCAACATGGAGCATGTGATTATCTCCTTAAGCCTATAAGGATGAAAGAACTGCGAAATATATGGCAGCATGTCTTTAGAAAAAGGATACACGAGGCAAAAGAGTTTGAAAGCTTTGAGAGTTTTGAGAGCATGATGAGAAATGGATCAGAGCTATCAGATGAGGGGAACTTGTTTGCTGTAGAAGATGTGACCTCAACAAAGAAAAGAAAAGATGCAGATAACAAACACGATGACAAAGAATGTATGGATCCATCATCTACCAAGAAAGCTAGAGTAGTATGGTCTGTAGATCTTCATCAGAAGTTTGTTAAAGCTGTGAATCAGATTGGATTTGATAAAGTTGGGCCGAAGAAAATACTGGATCTGATGAATGTTCCATGGCTGACTAGAGAGAATGTTGCCAGCCATTTGCAGAAATACCGGCTTTATTTGATTAGGATTCAGAAAGAAAACGATCGAAGATCTTCCTCGAGTGGTATGAAGCATTCAGATTTTCCTTCAAAAGATCTGGGAAGTTTTGGATTTCAAAACCCAGTAAACAAGCAACAGAATGATGTTTCAACTGACAGCTACAATTATTCGGATGGATCATTACAGCTTCCGACCGTGGAAAATAAAAGTCATGAAGGTGATAAGGGATCTGTTTCACAGTTCACCATAGCAAAAAAAGGAAGGCCTTTGACTGGTAACGTTTCCGATTCAAATATGAGAGAGAGTTCAAGAGTTGGCCTCAATCAAACTTTTGCCCAGTCAGAAGGAAACCATGCAGTGTTTGATTGCTCCATGCCAACACAGTACTCTTGGACTGAAGTTCCACCCATGCAACTCAAAGAAGAACACAAGTCACTTGTTCATTTGAAAGATAGCTTCAATCAGATGCCATTACACGGGAATGCAGTTGACACCTTTCCAATTCAACCAGGAAGTCTTGTTATGAATGCTCAATCTTTAGAACCCATTTCAACTACAAATTCAGGATTGAAAACACATGGATATAATAACCTCAGTTGCATTTCTGATCTGGAAATTTACCAAAGAAACCTTCTTTTGGGAGGCGAGGCAGCTTCTGCACCTTTGGATGAGGACTTGCATTTCCAGTGGCTACAAGGTGAATGTTATAATATGAACTTTGGTCTGCAGAATATAGGAATGCCAGAATATTATGATCCAGGACTTATACCAGAAGCTCCAATTCACTTATATGATTCAGGCGATTACTCGGTTATAGATCAAGGTCTGTTCATAGCATGA 1575 0.4038 MDNGCFSSPRRDFPAGLRVLVVDDDPTWLKILEKMLKKCNYEVTTCCLARHALNLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRIHEAKEFESFESFESMMRNGSELSDEGNLFAVEDVTSTKKRKDADNKHDDKECMDPSSTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLIRIQKENDRRSSSSGMKHSDFPSKDLGSFGFQNPVNKQQNDVSTDSYNYSDGSLQLPTVENKSHEGDKGSVSQFTIAKKGRPLTGNVSDSNMRESSRVGLNQTFAQSEGNHAVFDCSMPTQYSWTEVPPMQLKEEHKSLVHLKDSFNQMPLHGNAVDTFPIQPGSLVMNAQSLEPISTTNSGLKTHGYNNLSCISDLEIYQRNLLLGGEAASAPLDEDLHFQWLQGECYNMNFGLQNIGMPEYYDPGLIPEAPIHLYDSGDYSVIDQGLFIA 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03414 524 Gene3D - 17 190 - -
Viun1g03414 524 FunFam Two-component response regulator 193 256 - -
Viun1g03414 524 MobiDBLite consensus disorder prediction 259 345 - -
Viun1g03414 524 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160
Viun1g03414 524 MobiDBLite consensus disorder prediction 281 312 - -
Viun1g03414 524 CDD REC_typeB_ARR-like 19 133 - -
Viun1g03414 524 FunFam Two-component response regulator 17 171 - -
Viun1g03414 524 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160
Viun1g03414 524 Pfam Myb-like DNA-binding domain 199 249 IPR001005 -
Viun1g03414 524 SMART REC_2 17 129 IPR001789 GO:0000160
Viun1g03414 524 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 307 IPR045279 GO:0009736
Viun1g03414 524 NCBIfam myb-like DNA-binding domain, SHAQKYF class 197 250 IPR006447 GO:0003677
Viun1g03414 524 SUPERFAMILY Homeodomain-like 195 252 IPR009057 -
Viun1g03414 524 SUPERFAMILY CheY-like 16 145 IPR011006 -
Viun1g03414 524 Gene3D - 193 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03414 Viun-Chr1 41257717 41261744 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03414 13 255 Response Regulator Gene Family AT2G25180 57.087 1.90e-82 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Viun1g03414 Response_reg 1.3e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03414 K14491 - gmx:100797421 901.738