Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03411 ATGTGGCAAAATCAGCCCAATCATTCTTCTTACACTGATTCTGTCAAGACTCTTGAAGATGATATACAACATGCTAATTCCTTGGCATTGTCACTTCCTGGAGATTGTGATGGGAACTATTTTCAGATGAAATTATCTTACAGCCCCTTTGCACCTCTTTTCTTGCACTTGATTCAATGGTTGGATCTTAGTTGCACAGATACTTTGCCTCTGTATTTGGGATTACTCCACATACTTATTTTCAATGTATATGCTGATGGAATACCATCTATTTCCTCAAATGAAAGGAAAGCAACTATAAAAGAATTTTATGCTGTTATATACCCTTCATTAAGGTTGCTTCAAGGCGAGTTTAACAATGATCGAAGACACAGTTATGCAGAAGTGAACAGAAAGAGGCTTGAAAAGGTTCTGAATAAAGATTTAGAGGGAGATGAAGAATGTGGCATATGCATGGAAAATAACATGAAGATGGTTCTGCCTAATTGTGGACATTCCTTCTGCATAAGTTGCTTCCATGATTGGTATATGAGATCAGAGTCATGCCCCTTTTGCCGTGGAAGCATGAGAAGGATCAGTTCTGCAGATTTATGGATAGTGATTGGCAACAATGATGTTGTTGACAGCTTCACCATTGCAAAAGACAATTTGAGACGTTTATACCTATTCATTCAAACTCTGCCTCTAATCATACCAGAACCACATCTACTATACACATTCAATTACATGCTATGA 735 0.3755 MWQNQPNHSSYTDSVKTLEDDIQHANSLALSLPGDCDGNYFQMKLSYSPFAPLFLHLIQWLDLSCTDTLPLYLGLLHILIFNVYADGIPSISSNERKATIKEFYAVIYPSLRLLQGEFNNDRRHSYAEVNRKRLEKVLNKDLEGDEECGICMENNMKMVLPNCGHSFCISCFHDWYMRSESCPFCRGSMRRISSADLWIVIGNNDVVDSFTIAKDNLRRLYLFIQTLPLIIPEPHLLYTFNYML 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03411 244 SMART ring_2 148 185 IPR001841 -
Viun1g03411 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 196 IPR013083 -
Viun1g03411 244 Pfam Zinc finger, C3HC4 type (RING finger) 145 191 - -
Viun1g03411 244 SUPERFAMILY RING/U-box 134 190 - -
Viun1g03411 244 PANTHER RING FINGER PROTEIN 41, 151 9 236 - -
Viun1g03411 244 ProSiteProfiles Zinc finger RING-type profile. 148 186 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03411 Viun-Chr1 41249418 41252025 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03411 112 206 C3H Transcription Factor Family AT2G20030 29.524 4.72e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03411 - - gmx:100805014 414.461