Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03397 ATGGAAATTCTAATTCCACTGTCATTTATGTTGCTCTTTCTGCTGCTTGTACCTTCCTGCATTTGTTCTTCCCCACTTCAAGATCCTGAACTAGTGGTGGAAGATGTACAAAAGAGCATTAATGCCTCAAGGAGGAACTTGGCATTTCTCTCTTGTGGGACGGGGAACCCCATTGATGATTGTTGGAGGTGTGATCCGAATTGGGAAAAGAATCGGAAGAATTTAGCAGAGTGTTCCATTGGGTTTGGAAAGCATGCAATTGGAGGAAGGGATGGTAAGATATATGTGGTGACTGACCCTGGTGATCACCCTGTGAATCCAAAGCCAGGAACACTGAGATATGGTGTGATCCAAGAGGAGCCACTGTGGATCATTTTCAAGCGTGACATGGTGATTCAGCTGAAGCAAGAGCTTATGATGAACTCTTTCAAGACCATTGATGGTAGAGGGGCAAGTGTGCACATTGCTGGTGGCCCTTGCATTACTATACAGTATGTGAGCAACATTATCATTCATGGGATTAACATCCATGACTGCAGACAAGGTGGGAATGCCTATGTGAGAGATTCCCCCACCCATTATGGGTGGAGGACTCTCTCAGATGGTGATGGCATTTCCATCTTTGGTGGCAGCCATGTTTGGGTGGATCACTGTTCTCTCTCCAATTGCCGTGATGGGTTGATTGATGCCATCCATGGATCCACTGCCATTACCATCTCCAACAATTACCTGACCCACCACAACAAGGTCATGCTTTTGGGCCACAGTGATACTTTCACTAGGGACAAGAACATGCAAGTCACCATTGCCTTTAACCATTTTGGAGAAGGGCTGGTACAGAGAATGCCAAGATGTAGGTATGGATACTTCCATGTGGTGAACAATGATTACACACAATGGGAAATGTATGCCATAGGAGGGAGTGCTGCTCCAACAATCAATAGCCAAGGGAATAGATTTTTTGCTCCTAATGATCATACCTTCAAAGAGGTGACAAAGAGGGAGAATGCAGCACAGAGCAAGTGGAAGAATTGGAACTGGAGGTCAACGGGAGATTTGATGCTAAACGGTGCGTTTTTCACAGCATCAGGAGCAGGTTCATCTTCAAGCTATGCAAGAGCATCAAGTTTAGCAGCAAAACCATCTTCAGTTGTGAGTTCTTTAACAGCATCAGCAGGATCACTTAGATGTAGAAAGGGTTCACGTTGCTGA 1212 0.4521 MEILIPLSFMLLFLLLVPSCICSSPLQDPELVVEDVQKSINASRRNLAFLSCGTGNPIDDCWRCDPNWEKNRKNLAECSIGFGKHAIGGRDGKIYVVTDPGDHPVNPKPGTLRYGVIQEEPLWIIFKRDMVIQLKQELMMNSFKTIDGRGASVHIAGGPCITIQYVSNIIIHGINIHDCRQGGNAYVRDSPTHYGWRTLSDGDGISIFGGSHVWVDHCSLSNCRDGLIDAIHGSTAITISNNYLTHHNKVMLLGHSDTFTRDKNMQVTIAFNHFGEGLVQRMPRCRYGYFHVVNNDYTQWEMYAIGGSAAPTINSQGNRFFAPNDHTFKEVTKRENAAQSKWKNWNWRSTGDLMLNGAFFTASGAGSSSSYARASSLAAKPSSVVSSLTASAGSLRCRKGSRC 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03397 403 Gene3D - 55 396 IPR012334 -
Viun1g03397 403 FunFam Pectate lyase 55 396 - -
Viun1g03397 403 SUPERFAMILY Pectin lyase-like 40 397 IPR011050 -
Viun1g03397 403 PANTHER PECTATE LYASE 18-RELATED 28 401 IPR045032 GO:0030570
Viun1g03397 403 SMART amb_all 129 326 IPR002022 -
Viun1g03397 403 PRINTS Pollen allergen Amb family signature 201 222 IPR018082 -
Viun1g03397 403 PRINTS Pollen allergen Amb family signature 374 397 IPR018082 -
Viun1g03397 403 PRINTS Pollen allergen Amb family signature 281 300 IPR018082 -
Viun1g03397 403 PRINTS Pollen allergen Amb family signature 78 95 IPR018082 -
Viun1g03397 403 PRINTS Pollen allergen Amb family signature 101 126 IPR018082 -
Viun1g03397 403 PRINTS Pollen allergen Amb family signature 303 322 IPR018082 -
Viun1g03397 403 PRINTS Pollen allergen Amb family signature 345 369 IPR018082 -
Viun1g03397 403 PRINTS Pollen allergen Amb family signature 137 153 IPR018082 -
Viun1g03397 403 Pfam Pectate lyase 136 320 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03397 Viun-Chr1 41181253 41183453 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03397 7 403 Polysaccharide Lyase AT5G63180 76.980 0.0 637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03397 K01728 - gmx:100816256 763.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03397 1 41181253 41183453 Viun1g03397 1 41181253 41183453 ECH
Viun1g03397 1 41181253 41183453 Viun3g04332 3 51115324 51117490 ECH
Viun1g03397 1 41181253 41183453 Viun9g01400 9 14918570 14921170 ECH