Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03396 ATGTTCCTCCCAAACATTATGGCATTTTCATTCACATTCACATTCCACCTTTTGCTTCTTGTCCCATCTGTGGTTTATGTTTCTACTTCTCATGTTCAAGATCCTGAATTAGTGGTCCAGGAAGTGGAAAAGAGCATTAATGGGTCAAGGAGAAATTTGGGGTACCTTTCTTGTGGGACGGGGAACCCCATTGATGATTGTTGGAGGTGCGACCCGAACTGGGAAAGGAATCGCAAGCGTTTGGCAAGTTGTGGTATTGGGTTCGGCAAGAATGCGATTGGTGGAAGAGATGGGAAAGTGTATGTGGTGAGTGACCCCAGTGATAACCCTATGAACCCTAAACCAGGTACATTGAGACATGGCGTTATCCAAGAAGAGCCTTTGTGGATAATTTTCAAGCGTGACATGGTGATCAAGCTGCACATGGATCTCCTTGTTAATTCTTACAAAACCATTGATGGAAGAGGAGCAACTATCCACATTGCTGGAGGGCCTTGCATTAAAGTGCACAACAAGAGGAATATCATAATTCATGGCATACACATTCATGATTGCAAACGAGGTGGGAGTGGATATGTCACTGATTTTCCCAACCATCGCAGTTGGAGTGCAAGATCGGACGGTGATGGGATCACAATCTCTGGTGCGAGTCATGTCTGGGTGGACCATTGCTCCCTGTCAAACTGTTTTGATGGCCTGATTGATGTTGTTCATGGATCAACGGCCATCACCATTTCCAACAATTACATGACACACCATAACAAGGTCATGCTCTTGGGCCACAGTGATTCCTATAAAGATGACAAGAATATGCAAGTGACCATAGCCTTCAACCATTTTGGAGAAGGGCTAGGAGGAAGAATGCCTAGATGCAGGTTTGGATACTTTCATGTGGTAAACAACGATTACACACATTGGCAGCATTACGCAATAGGTGGGAGTTCATCCCCAACTATTTTCAGCCAAGGGAATAGATTTCTTGCTCCAAATGATGAAGACCATAAAGAGGTGACCAAACATTTTAAATCATCAGAAAGAGAGTGGAAGAAATGGAATTGGAGGTCTGAAGGAGATCTAATGTTGAATGGAGCCTTCTTCACACCGTCAGGGGCAGGAGCAACAGCTAGATATGACAGAGCGTCAAGCATGGCAGCAAGACCACCTCTACTTGTGCCTTCACTCACTGCGGGGGCTGGTGCACTTAGATGCAAAAATGGCCACCTATGCGGACACTAG 1236 0.4523 MFLPNIMAFSFTFTFHLLLLVPSVVYVSTSHVQDPELVVQEVEKSINGSRRNLGYLSCGTGNPIDDCWRCDPNWERNRKRLASCGIGFGKNAIGGRDGKVYVVSDPSDNPMNPKPGTLRHGVIQEEPLWIIFKRDMVIKLHMDLLVNSYKTIDGRGATIHIAGGPCIKVHNKRNIIIHGIHIHDCKRGGSGYVTDFPNHRSWSARSDGDGITISGASHVWVDHCSLSNCFDGLIDVVHGSTAITISNNYMTHHNKVMLLGHSDSYKDDKNMQVTIAFNHFGEGLGGRMPRCRFGYFHVVNNDYTHWQHYAIGGSSSPTIFSQGNRFLAPNDEDHKEVTKHFKSSEREWKKWNWRSEGDLMLNGAFFTPSGAGATARYDRASSMAARPPLLVPSLTAGAGALRCKNGHLCGH 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03396 411 PRINTS Pollen allergen Amb family signature 287 306 IPR018082 -
Viun1g03396 411 PRINTS Pollen allergen Amb family signature 351 375 IPR018082 -
Viun1g03396 411 PRINTS Pollen allergen Amb family signature 309 328 IPR018082 -
Viun1g03396 411 PRINTS Pollen allergen Amb family signature 207 228 IPR018082 -
Viun1g03396 411 PRINTS Pollen allergen Amb family signature 107 132 IPR018082 -
Viun1g03396 411 PRINTS Pollen allergen Amb family signature 143 159 IPR018082 -
Viun1g03396 411 PRINTS Pollen allergen Amb family signature 84 101 IPR018082 -
Viun1g03396 411 PRINTS Pollen allergen Amb family signature 380 403 IPR018082 -
Viun1g03396 411 FunFam Pectate lyase 61 402 - -
Viun1g03396 411 Gene3D - 61 402 IPR012334 -
Viun1g03396 411 PANTHER PECTATE LYASE 18-RELATED 29 406 IPR045032 GO:0030570
Viun1g03396 411 Pfam Pectate lyase 146 326 IPR002022 -
Viun1g03396 411 SMART amb_all 135 332 IPR002022 -
Viun1g03396 411 SUPERFAMILY Pectin lyase-like 62 400 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03396 Viun-Chr1 41173806 41175682 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03396 5 409 Polysaccharide Lyase AT5G63180 67.317 0.0 560
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03396 K01728 - gmx:100801136 757.288