Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03391 ATGGGAGAAACCGGAATCATTGTCCGGTTGGAAGGAAGCTTAGACCCAAGAGCTGAAGAGTTCAGACCAAGCATCAACAACAACGCTATTATTCAATGCCAATGGTACCCTATTCCGTTACCGTTACCCTTACCGTTGCCGTTTCCACACCCTCTTCCTCCTCCTCCGCCTCCTCACCTCTCCACCTCCTCCACCCGCTCCCTCCTCCTCACGCCGCTCCCCTTCACCTCCGACTCCGCCCTCCGCGCCGAACTCCAGGCCTTCGGCGACGTCAGAGCCCTTCAAACGGAAGCCCTCCGCCACGGAATCCTCATCGTCCACTTCTACGACCTCCGCCATGCAGAGTCCGCCTTCGCCGCCATCCGCTCCATGCACCACCACTTCCCCCCGCCCACCCCGGGCCTCCTCTCCGGCCGCCCCATCTCCGCCCACTACGTCCTCCCCTCCTCCTCCTCCATCCCCGACGCCCACAACCAAGGCACCCTCGTCGTCTTCAACCTGGACCCCCACCTCTCCACCGACCACCTCCGTCGACTCTTCCACCCTTTCGGTCCCATAAAGGAATTGAGAGATACCCCATGGAAAAAGAACCAAAGATTCGTCGAGTTCTTCGACACCAGAGACGCTGCCAAGGCATTGAAGCACATGAACGGCAAGCAAATTCACGGCAAACCCATCATCATCGAGTTCAGCAGACCCGGTGGCCACACCCGCAGATTCTTCCACCACTCTCCTTCCTCCAAAACCACCCCTCTCCATTTCAATGCCCCACCACCACCACCGCCACCACCCTTCCCTCCTTCCCCGCCGCGTCGTTTTGCTGCTCCTCGCCTGCATACCTCTCACCCCCCTCAATTCTCTCGCACTAAATCATTGGCAAGTCCCGTCAAGGTCCAAGATTCTCTGGATGAGGCAATTGGGTCAATGAGTTTGACCGGGGATGTTGGACATGGGGTTCAAGAGCAGCAGCACCACTCACATGGTGGTGGCCCCCCAAGGAGGAATCTCAGCAGAAAGCAGAGTTGCGAGACCACGCTAGTCGTAGCAACCACAAAGCAGCAGCAGCAACAACAACAACCACAGCAACTACCTAGAAGTAGGCACTGGAAGGGAAAGCAAGCAAAGAAACTCGAAGCTCGCTTTCTAATAAAAGAAGACGCCATTGTCGAGTCTGGTCCCAAAGATACTCGAACCACTGTCATGATCAAAAACATTCCCAACAAGTACAGTCAGAAGTTGCTATTGAACATGCTGGATAATCACTGCATACACTGCAACGAGCAGATTGCAGACGGCGATGAGCAGCCTCTATCCTCCTACGACTTCGTGTACCTCCCCATTGATTTCAACAACAAGTGCAACGTGGGATATGGGTTCGTGAACATGACATCCCCGGAGGCCACACTGAGGCTCTACAAGGCCTTCCATCTCCAACACTGGGAGGTTTTCAACTCAAGAAAAATCTGTGAAGTGACCTATGCAAGAGTTCAGGGTTTGGAGGCATTGAAGGAGCACTTTAAGAACTCAAAGTTCCCATGCGAGATGGAGCATTACCTGCCAGTGGTGTTTTCACCGCCTCGAGATGGCAGGGAACTCACTGAGCCACTTCCCTTAGTGGGGAACAGCACCGCCAAGCACCATCAACCACCCGTTTCAATCCCGAACTGCGATGATAATGGCGGTGATGACGTGGAAAGCAGCAAAAGCGGCGACGTTGGTGACGACGATGATGGTGATGATGACACGAATGCAGAGGCCTAG 1761 0.5491 MGETGIIVRLEGSLDPRAEEFRPSINNNAIIQCQWYPIPLPLPLPLPFPHPLPPPPPPHLSTSSTRSLLLTPLPFTSDSALRAELQAFGDVRALQTEALRHGILIVHFYDLRHAESAFAAIRSMHHHFPPPTPGLLSGRPISAHYVLPSSSSIPDAHNQGTLVVFNLDPHLSTDHLRRLFHPFGPIKELRDTPWKKNQRFVEFFDTRDAAKALKHMNGKQIHGKPIIIEFSRPGGHTRRFFHHSPSSKTTPLHFNAPPPPPPPPFPPSPPRRFAAPRLHTSHPPQFSRTKSLASPVKVQDSLDEAIGSMSLTGDVGHGVQEQQHHSHGGGPPRRNLSRKQSCETTLVVATTKQQQQQQQPQQLPRSRHWKGKQAKKLEARFLIKEDAIVESGPKDTRTTVMIKNIPNKYSQKLLLNMLDNHCIHCNEQIADGDEQPLSSYDFVYLPIDFNNKCNVGYGFVNMTSPEATLRLYKAFHLQHWEVFNSRKICEVTYARVQGLEALKEHFKNSKFPCEMEHYLPVVFSPPRDGRELTEPLPLVGNSTAKHHQPPVSIPNCDDNGGDDVESSKSGDVGDDDDGDDDTNAEA 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03391 586 MobiDBLite consensus disorder prediction 569 586 - -
Viun1g03391 586 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 160 233 IPR000504 GO:0003723
Viun1g03391 586 Gene3D - 153 239 IPR012677 -
Viun1g03391 586 MobiDBLite consensus disorder prediction 240 371 - -
Viun1g03391 586 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 162 226 IPR000504 GO:0003723
Viun1g03391 586 MobiDBLite consensus disorder prediction 282 296 - -
Viun1g03391 586 PANTHER RNA RECOGNITION MOTIF-CONTAINING 76 525 - -
Viun1g03391 586 MobiDBLite consensus disorder prediction 532 586 - -
Viun1g03391 586 FunFam Protein MEI2-like 1 159 252 - -
Viun1g03391 586 CDD RRM3_EAR1_like 397 498 IPR034458 -
Viun1g03391 586 MobiDBLite consensus disorder prediction 337 366 - -
Viun1g03391 586 FunFam Terminal EAR1-like 1 345 503 - -
Viun1g03391 586 MobiDBLite consensus disorder prediction 252 273 - -
Viun1g03391 586 SMART rrm1_1 161 229 IPR000504 GO:0003723
Viun1g03391 586 Pfam RNA recognition motif 2 397 507 IPR007201 -
Viun1g03391 586 SUPERFAMILY RNA-binding domain, RBD 161 475 IPR035979 GO:0003676
Viun1g03391 586 Gene3D - 320 503 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03391 Viun-Chr1 41147615 41150594 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03391 155 270 Eukaryotic Initiation Factors Gene Family AT4G34110 30.000 3.36e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03391 - - vum:124847631 952.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03391 1 41147615 41150594 Viun1g03391 1 41147615 41150594 ECH