Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03390 ATGGGAGAAACCGGAATCATTGTCCGGTTGGAAGGAAGCTTAGACCCAAGAGCTGAAGAGTTCAGACCAAGCATCAACAACAACGCTATTATTCAATGCCAATGGTACCCTATTCCGTTACCGTTACCCTTACCGTTGCCGTTTCCACACCCTCTTCCTCCTCCTCCGCCTCCTCACCTCTCCACCTCCTCCACCCGCTCCCTCCTCCTCACGCCGCTCCCCTTCACCTCCGACTCCGCCCTCCGCGCCGAACTCCAGGCCTTCGGCGACGTCAGAGCCCTTCAAACGGAAGCCCTCCGCCACGGAATCCTCATCGTCCACTTCTACGACCTCCGCCATGCAGAGTCCGCCTTCGCCGCCATCCGCTCCATGCACCACCACTTCCCCCCGCCCACCCCGGGCCTCCTCTCCGGCCGCCCCATCTCCGCCCACTACGTCCTCCCCTCCTCCTCCTCCATCCCCGACGCCCACAACCAAGGCACCCTCGTCGTCTTCAACCTGGACCCCCACCTCTCCACCGACCACCTCCGTCGACTCTTCCACCCTTTCGGTCCCATAAAGGAATTGAGAGATACCCCATGGAAAAAGAACCAAAGATTCGTCGAGTTCTTCGACACCAGAGACGCTGCCAAGGCATTGAAGCACATGAACGGCAAGCAAATTCACGGCAAACCCATCATCATCGAGTTCAGCAGACCCGGTGGCCACACCCGCAGATTCTTCCACCACTCTCCTTCCTCCAAAACCACCCCTCTCCATTTCAATGCCCCACCACCACCACCGCCACCACCCTTCCCTCCTTCCCCGCCGCGTCGTTTTGCTGCTCCTCGCCTGCATACCTCTCACCCCCCTCAATTCTCTCGCACTAAATCATTGGCAAGTCCCGTCAAGGTCCAAGATTCTCTGGATGAGGCAATTGGGTCAATGAGTTTGACCGGGGATGTTGGACATGGGGTTCAAGAGCAGCAGCACCACTCACATGGTGGTGGCCCCCCAAGGAGGAATCTCAGCAGAAAGCAGAGTTGCGAGACCACGCTAGTCGTAGCAACCACAAAGCAGCAGCAGCAACAACAACAACCACAGCAACTACCTAGAAGTAGGCACTGGAAGGGAAAGCAAGCAAAGAAACTCGAAGCTCGCTTTCTAATAAAAGAAGACGCCATTGTCGAGTCTGGTCCCAAAGATACTCGAACCACTGTCATGATCAAAAACATTCCCAACAAGTACAGTCAGAAGTTGCTATTGAACATGCTGGATAATCACTGCATACACTGCAACGAGCAGATTGCAGACGGCGATGAGCAGCCTCTATCCTCCTACGACTTCGTCAACAAGTGCAACGTGGGATATGGGTTCGTGAACATGACATCCCCGGAGGCCACACTGAGGCTCTACAAGGCCTTCCATCTCCAACACTGGGAGGTTTTCAACTCAAGAAAAATCTGTGAAGTGACCTATGCAAGAGTTCAGGGTTTGGAGGCATTGAAGGAGCACTTTAAGAACTCAAAGTTCCCATGCGAGATGGAGCATTACCTGCCAGTGGTGTTTTCACCGCCTCGAGATGGCAGGGAACTCACTGAGCCACTTCCCTTAGTGGGGAACAGCACCGCCAAGCACCATCAACCACCCGTTTCAATCCCGAACTGCGATGATAATGGCGGTGATGACGTGGAAAGCAGCAAAAGCGGCGACGTTGGTGACGACGATGATGGTGATGATGACACGAATGCAGAGGCCTAG 1740 0.5506 MGETGIIVRLEGSLDPRAEEFRPSINNNAIIQCQWYPIPLPLPLPLPFPHPLPPPPPPHLSTSSTRSLLLTPLPFTSDSALRAELQAFGDVRALQTEALRHGILIVHFYDLRHAESAFAAIRSMHHHFPPPTPGLLSGRPISAHYVLPSSSSIPDAHNQGTLVVFNLDPHLSTDHLRRLFHPFGPIKELRDTPWKKNQRFVEFFDTRDAAKALKHMNGKQIHGKPIIIEFSRPGGHTRRFFHHSPSSKTTPLHFNAPPPPPPPPFPPSPPRRFAAPRLHTSHPPQFSRTKSLASPVKVQDSLDEAIGSMSLTGDVGHGVQEQQHHSHGGGPPRRNLSRKQSCETTLVVATTKQQQQQQQPQQLPRSRHWKGKQAKKLEARFLIKEDAIVESGPKDTRTTVMIKNIPNKYSQKLLLNMLDNHCIHCNEQIADGDEQPLSSYDFVNKCNVGYGFVNMTSPEATLRLYKAFHLQHWEVFNSRKICEVTYARVQGLEALKEHFKNSKFPCEMEHYLPVVFSPPRDGRELTEPLPLVGNSTAKHHQPPVSIPNCDDNGGDDVESSKSGDVGDDDDGDDDTNAEA 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03390 579 MobiDBLite consensus disorder prediction 525 579 - -
Viun1g03390 579 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 160 233 IPR000504 GO:0003723
Viun1g03390 579 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 162 226 IPR000504 GO:0003723
Viun1g03390 579 Gene3D - 340 494 IPR012677 -
Viun1g03390 579 MobiDBLite consensus disorder prediction 240 371 - -
Viun1g03390 579 MobiDBLite consensus disorder prediction 282 296 - -
Viun1g03390 579 CDD RRM3_EAR1_like 397 491 IPR034458 -
Viun1g03390 579 PANTHER RNA RECOGNITION MOTIF-CONTAINING 76 518 - -
Viun1g03390 579 MobiDBLite consensus disorder prediction 337 366 - -
Viun1g03390 579 MobiDBLite consensus disorder prediction 252 273 - -
Viun1g03390 579 Pfam RNA recognition motif 2 397 500 IPR007201 -
Viun1g03390 579 SUPERFAMILY RNA-binding domain, RBD 161 469 IPR035979 GO:0003676
Viun1g03390 579 SMART rrm1_1 161 229 IPR000504 GO:0003723
Viun1g03390 579 MobiDBLite consensus disorder prediction 562 579 - -
Viun1g03390 579 FunFam Terminal EAR1-like 1 345 496 - -
Viun1g03390 579 Gene3D - 153 239 IPR012677 -
Viun1g03390 579 FunFam Protein MEI2-like 1 159 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03390 Viun-Chr1 41147614 41150594 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03390 155 270 Eukaryotic Initiation Factors Gene Family AT4G34110 30.000 3.30e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03390 - - vum:124847631 929.858