Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03389 ATGGGTGGCAAAGGTGGAATTTTTCGTTATGCAGATGGATTTGACAAATTGCTGTTACTCTTTGGGACACTGGGTTGCATTGGAGGTGGATTACAGACCCCTATGACAATGCTTGTTCTTGGAAGTTTGATAAATGATTATGAAGGTGGATCTGAACATTCCGTGCCCAACCATGTTATAGACAAGTACGCTCTAAGGCTGCTTGGTGTTGCAATTGGGGTTGCTTTATCGTCCTTTATAGAAGGGGTATGTTGGACAAGAACTGCAGAGAGACAAACCTCTCGCATGAGAATCGAATACCTTAAATCAGTCCTAAGGCAAGAGGTTGGTTTCTTCGACAAGCAATCTGAATCTTCCACAACTTTCCAAGTTATTGCCACCATAACTTCTGATGCACAAACAATCCAAGATACCATAGCTGATAAGGTGCCCAATTGTCTGGGTCACCTCTCAGCATTTCTCTCTAGCTTTATAGTGGCACTCTTCCTTTCATGGAGACTTGCAGTGTCTGCTTTTCCATTTTCAATCATGATGATTATGCCTGCAATCATATTTGGTAAGGCCATGAAAGAGCTGGGGAATAAAATGAAGGATGCATATGGAGTTGCTGGTAGCATAGCTGAACAAGCAATCTCGTCAATTCGCACTGTTTATTCATATGTGGGCGAGAAGCAAACAATGCAAGCGTTCAACTCGGGTCTTGAAAAAAGTATGGAGATTGGCATAAAACAAGGTCAAATCAAGGGAGTGATAATCGGTAGCATTGGGTTGCTATATGCTACTTGGGCATTCCAATCTTGGGTTAGTAGTGTTCTGGTCAGGACAAAAGGAGAAAGTGGTGGCCCTGTGTTTTGTGCTGAGATATGCATCATTTGGGGAGGACTGTCTCTGATGAGTGCACTCCCAAATCTTGGTTTCATATTAGAGGCAACAATAGCTACTACACGGATTTTTGAGATGATTGATCGAGTGCCGAGCATAAATTCTTACAGAGAAAAAGGAAAGGTCTTGACACATGCAAGAGGAGAAATCACATTTCAAGATGTTGAGTTTAGTTACCCATCAAGGCCTGATGCACTGATTCTCCAAGGACTCAATCTGAAAGTGCAGGCGGGGAAAACACTAGGCCTAGTTGGAGGGAGTGGTTCTGGAAAATCTACTATAATCTCTTTGCTTGAAAGATTTTATGATCCTGTTTACGGCGAGATATTGCTTGATGGATATGATATACAGACACTTCACCCTAAGTGGTTAAGGTCCCAGATAGGACTGGTAAATCAGGAGCCAATTCTCTTTGCAACATCCATAAGGGAGAACATTCTATTTGGCAAGGAAGGAGCTTCAATGGATGCAGTTATAAGCGCAGCAAAGGCAGCAAATGCACATGATTTCATTGTCAAACTTCCTAATGCATATGAAACTCAAGTGGGACAATTCGGTGCTCAGTTGTCTGGAGGGCAAAAGCAAAGGATCGCCATTGCAAGGGCTTTAATAAGAGAACCCAAAATCCTACTACTTGATGAAGCAACAAGTGCTTTGGATTCACAGTCTGAAAGACTAGTGCAGGAGGCCCTTGAGAAAGCTTCTAGAGGCAGGACAACAATCATCATAGCGCATCGCCTGTCAACAATTCGCAAAGCTGATTCAATAGTAGTTCTTCAAACAGGAAAAGTAGTTGAATGTGGTTCCCATGATGAACTACTCCAACTGAACAATGGACAAGGAGGGGCTTACAGAAAAATGCTACAGCTGCAACAAGCGACAAGCCAAAACGAAATTGCATTGCATACAATAGACAAGAGTCCCTTAGCTATGGAAAATCTTACAAGTTCAAATTCGAGATGGCAAAGTAGCCCAACTCATCATGCACTTAGCTCAACACAACCATTTAGTCCCATATATTCAATCAGTGTTGTAGGGTCTAGCTTTGATGACTATGACAGGGAACACTATGAGAAATCTTCACATGCTAACTTCTCTCAATGGCGTTTACTAAGAATGAATTCCCCAGAATGGAAACATGCTTTGCTTGGTTGTTTAGGGGCCATTGGCTCTGGAATATGTCAACCAATTTACTCCTATTGCTTGGGAATAGTTGCATCTGTCTACTTTATAAAAGATGACTCTCTCATCAAATCAAAAATCAGGTTGTACTCCTCCATCTTCTGCTGCATTGCTGTTGTCTACTTCATTTCAGGCCTCCTTCAGCACTACAATTTCACCATTATGGGAGAGAGTTTGCTAAAAAGGGTGCGAGAAAATTTGCTAGAGAAGGTGTTGACTTTTGAGATGGGATGGTTTGATGAAGAGGAGAACGGCAGTGCAGCAATTTGTGCTCGTTTGGCAAGTGAAGCCAACTTGGTCAGATCCCTTGTTGCAGAACGAATGTCATTGATAGTTAATATTTCTGTTATGGCTCTCTTGGCTTTTGTACTTAGTTTGATTGTTACATGGAGGGTGGCTATAGTCATGATTGCAATGCAGCCTTTGATCATTGCCTGTTTCTACTCAAAAAACATTCTCATGAAAAGTATGGCAGGAAAAGCAAGAAGGGCTCAGAGAGAAGGTAGTCAATTAGCAATGGAAGCTACCGTTAACCACAGGACTATTGCTGCATTTTCATCTGAGAAAAGGATTCTAAACTTGTTCAGAACTTCTATGGAGGGCCCTAAGAAGGAAAGCATCAAGCAATCATGGATTTCAGGTTCCATTTTGTCAGTCTCGTATTTTGTAACAACAGCATCTATAACTTTGACTTTTTGGTATGGAGGCCGGTTACTGAATCGAAATCTGGTGGATTCAAAACATCTTTTGCAAGTTTTCCTCATTTTGATGGGCACTGGTAGACAAATTGCAGAGACAGCAAGCGCAACTTCTGACATAGCTAAAAGTGGAAGAGCCATTAGTTCAGTATTTGCTATACTGGATAGGAAAAGTGAGATTGAACCAGAAGATCCTAGACTTAGAAAGTGTAAAAATTCTTTGAAGGGCCATATAAAACTTAGAGATGTATTTTTCTCATACCCAACAAGGCCAGACCAAGTGATTCTCAAGGGCCTCAATCTTGATATTGAAGCTGGAAAAACAGTTGCATTAGTGGGACAAAGTGGCTCTGGTAAATCCACCATCATTGGCTTAATCGAAAGATTTTATGACCCCATTAAGGGATCCATATCCATAGACAATTGTGACATAAGGGAATTTAACTTAAGAAGTTTGAGAGCACATATTGCCTTGGTTAGTCAGGAGCCAACTCTCTTTGCAGGAACTATACGTGACAACATTGTGTATGGGAAAAAGGATGCATCAGAAGATGAAATAAGAAAGGCAGCACGTCTTTCAAATGCTCATGAGTTTATAAGTTCAATGAAAGATGGATACGATACTTACTGTGGAGAAAGAGGAGTGCAGCTATCAGGAGGGCAGAAGCAGAGAATAGCCATTGCTCGAGCAGTACTTAAGAATCCTTCAATTCTTCTGTTAGATGAGGCAACAAGTGCTCTAGACAGTGTATCAGAAAATCTGGTGCAGGAGGCACTGGAGAAAATGATGGTTGGAAGAACGTGTGTGGTTATAGCTCACCGTTTGTCAACAATACAGAATGTTGACACCATAGTTGTTATTCAAAATGGGAAGGTGGTGGAACAAGGCTCGCACTCAGAGTTATTGAGAATTGGATCAAATGGGGCCTATTACTCCTTGACTAGGCTACAACAGGACCACTCAACATGA 3732 0.4156 MGGKGGIFRYADGFDKLLLLFGTLGCIGGGLQTPMTMLVLGSLINDYEGGSEHSVPNHVIDKYALRLLGVAIGVALSSFIEGVCWTRTAERQTSRMRIEYLKSVLRQEVGFFDKQSESSTTFQVIATITSDAQTIQDTIADKVPNCLGHLSAFLSSFIVALFLSWRLAVSAFPFSIMMIMPAIIFGKAMKELGNKMKDAYGVAGSIAEQAISSIRTVYSYVGEKQTMQAFNSGLEKSMEIGIKQGQIKGVIIGSIGLLYATWAFQSWVSSVLVRTKGESGGPVFCAEICIIWGGLSLMSALPNLGFILEATIATTRIFEMIDRVPSINSYREKGKVLTHARGEITFQDVEFSYPSRPDALILQGLNLKVQAGKTLGLVGGSGSGKSTIISLLERFYDPVYGEILLDGYDIQTLHPKWLRSQIGLVNQEPILFATSIRENILFGKEGASMDAVISAAKAANAHDFIVKLPNAYETQVGQFGAQLSGGQKQRIAIARALIREPKILLLDEATSALDSQSERLVQEALEKASRGRTTIIIAHRLSTIRKADSIVVLQTGKVVECGSHDELLQLNNGQGGAYRKMLQLQQATSQNEIALHTIDKSPLAMENLTSSNSRWQSSPTHHALSSTQPFSPIYSISVVGSSFDDYDREHYEKSSHANFSQWRLLRMNSPEWKHALLGCLGAIGSGICQPIYSYCLGIVASVYFIKDDSLIKSKIRLYSSIFCCIAVVYFISGLLQHYNFTIMGESLLKRVRENLLEKVLTFEMGWFDEEENGSAAICARLASEANLVRSLVAERMSLIVNISVMALLAFVLSLIVTWRVAIVMIAMQPLIIACFYSKNILMKSMAGKARRAQREGSQLAMEATVNHRTIAAFSSEKRILNLFRTSMEGPKKESIKQSWISGSILSVSYFVTTASITLTFWYGGRLLNRNLVDSKHLLQVFLILMGTGRQIAETASATSDIAKSGRAISSVFAILDRKSEIEPEDPRLRKCKNSLKGHIKLRDVFFSYPTRPDQVILKGLNLDIEAGKTVALVGQSGSGKSTIIGLIERFYDPIKGSISIDNCDIREFNLRSLRAHIALVSQEPTLFAGTIRDNIVYGKKDASEDEIRKAARLSNAHEFISSMKDGYDTYCGERGVQLSGGQKQRIAIARAVLKNPSILLLDEATSALDSVSENLVQEALEKMMVGRTCVVIAHRLSTIQNVDTIVVIQNGKVVEQGSHSELLRIGSNGAYYSLTRLQQDHST 1243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03389 1243 Pfam ABC transporter 362 511 IPR003439 GO:0005524
Viun1g03389 1243 Gene3D ABC transporter type 1, transmembrane domain 67 972 IPR036640 GO:0005524|GO:0016020
Viun1g03389 1243 Gene3D - 342 614 IPR027417 -
Viun1g03389 1243 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 344 580 IPR003439 GO:0005524
Viun1g03389 1243 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 994 1238 IPR027417 -
Viun1g03389 1243 FunFam ABC transporter B family member 4 334 592 - -
Viun1g03389 1243 SMART AAA_5 371 557 IPR003593 GO:0016887
Viun1g03389 1243 SMART AAA_5 1026 1212 IPR003593 GO:0016887
Viun1g03389 1243 FunFam ABC transporter B family member 4 989 1242 - -
Viun1g03389 1243 CDD ABC_MTABC3_MDL1_MDL2 344 585 - -
Viun1g03389 1243 ProSitePatterns ABC transporters family signature. 483 497 IPR017871 GO:0005524|GO:0016887
Viun1g03389 1243 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 999 1235 IPR003439 GO:0005524
Viun1g03389 1243 PANTHER ABC TRANSPORTER B FAMILY 7 688 IPR039421 -
Viun1g03389 1243 SUPERFAMILY ABC transporter transmembrane region 663 983 IPR036640 GO:0005524|GO:0016020
Viun1g03389 1243 SUPERFAMILY ABC transporter transmembrane region 7 325 IPR036640 GO:0005524|GO:0016020
Viun1g03389 1243 ProSitePatterns ABC transporters family signature. 1138 1152 IPR017871 GO:0005524|GO:0016887
Viun1g03389 1243 Gene3D - 989 1243 IPR027417 -
Viun1g03389 1243 Pfam ABC transporter 1017 1166 IPR003439 GO:0005524
Viun1g03389 1243 Pfam ABC transporter transmembrane region 20 275 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun1g03389 1243 Pfam ABC transporter transmembrane region 677 943 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun1g03389 1243 CDD ABC_6TM_Pgp_ABCB1_D2_like 665 981 - -
Viun1g03389 1243 CDD ABC_6TM_Pgp_ABCB1_D1_like 19 317 - -
Viun1g03389 1243 CDD ABC_MTABC3_MDL1_MDL2 999 1238 - -
Viun1g03389 1243 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 20 284 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun1g03389 1243 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 676 963 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun1g03389 1243 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 335 585 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03389 Viun-Chr1 41137085 41142786 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03389 20 595 Calmodulin-binding Proteins AT2G36910 36.661 5.68e-104 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03389 K05658 - gmx:100804664 2156.72