Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03377 ATGGGTCTCTCAAATTTTCCGAGTGCATCGGAAGGGGTGCTTCCGGTGCTGGTGATAAACACGGTTCTCTCGGTGGCGGTGTTGAAGAACATGTTCAGATCCATGCTCCAAGTTGTGGGAGGAAGTGAAAGTCAAAGTCAAAGTGACGGTGAGAACACCGAAGAAGAGTGTCGTGAAAGTTCACGGGAAAGGAGGGTGTCGATAACTCAGTACAAGGCATTGCGGAAGGACATGGGGAGAAGAAGTGTGAGGATGGTGGAGTGCTGCGTTTGTTTGTGTCGTTTTGAAGGCAATGAAGAGGTTAGCGAGTTGCCTTGCAAACATTACTTCCACCGAGGTTGTTTGGAGAAATGGTTTCATAACAAACACTCCTCATGTCCCTTGTGTCGTTCCATGGATTAG 402 0.4826 MGLSNFPSASEGVLPVLVINTVLSVAVLKNMFRSMLQVVGGSESQSQSDGENTEEECRESSRERRVSITQYKALRKDMGRRSVRMVECCVCLCRFEGNEEVSELPCKHYFHRGCLEKWFHNKHSSCPLCRSMD 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03377 133 SMART ring_2 88 129 IPR001841 -
Viun1g03377 133 MobiDBLite consensus disorder prediction 40 63 - -
Viun1g03377 133 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 133 IPR013083 -
Viun1g03377 133 SUPERFAMILY RING/U-box 87 131 - -
Viun1g03377 133 PANTHER - 1 132 IPR044249 -
Viun1g03377 133 Pfam Ring finger domain 87 130 IPR001841 -
Viun1g03377 133 ProSiteProfiles Zinc finger RING-type profile. 88 130 IPR001841 -
Viun1g03377 133 CDD RING-H2_PA-TM-RING 87 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03377 Viun-Chr1 41075946 41076647 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03377 1 131 C3H Transcription Factor Family AT2G04240 32.237 3.84e-21 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03377 K16285 - gmx:100811790 189.504