Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03373 ATGGAGGTTTCCCTGCAGCACGTGTTCATTCTGGTGCTGTCTCTCTGCAATTTCTTAGTGTGCGCAAATGCTCAGTGGAAACCATTAAACCCTTCCACCTACGAGGAGATGAACCGCAGTGACAACTTCAGAGCCTCACTCAGTTTCTCCGTCTCCTGTGTCTCCATTGCCATCTTCTTGTACCTTTTCTTCAAAATCCGCGCGCGTTTTTTCCCGCGCCCTCCTTACATCAAGCCCCTCCCGAAAACAACCGCCGAAGCCATCCAACGGTGCCCCACCTTCGGTTTCTCCGAGATGAAGGAGCTGAGCGTGGGGAACGCGGCGGAGGAGTGCGCGGTGTGCTTGGTGGAGTTCGAAGACTCCGACACCGTGAAGCTGCTGCCGCTGTGCCAACATGTTTTCCACCAGCATTGCATCGACCAATGGCTGCCCTCGCGCCTCACGTGCCCCATTTGTCGCCAGAAGCTGATATCCGATGATACTGAAGCCAACGTCACCGATGTCCCGTCGGAACAAGAAAGAGAAGAAGAAGAAGAGGATGAAGATGGTGATGCTGCAGAGTTTACTGAGGTGGCAATAGCTTCAGCAACGGAACAAGCTGAAGATGAAACTGAAGCTGATAACGCTGTGGGATAG 636 0.533 MEVSLQHVFILVLSLCNFLVCANAQWKPLNPSTYEEMNRSDNFRASLSFSVSCVSIAIFLYLFFKIRARFFPRPPYIKPLPKTTAEAIQRCPTFGFSEMKELSVGNAAEECAVCLVEFEDSDTVKLLPLCQHVFHQHCIDQWLPSRLTCPICRQKLISDDTEANVTDVPSEQEREEEEEDEDGDAAEFTEVAIASATEQAEDETEADNAVG 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03373 211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 159 IPR013083 -
Viun1g03373 211 CDD RING-H2_EL5-like 110 153 - -
Viun1g03373 211 SMART ring_2 111 152 IPR001841 -
Viun1g03373 211 Pfam Ring finger domain 110 153 IPR001841 -
Viun1g03373 211 SUPERFAMILY RING/U-box 110 159 - -
Viun1g03373 211 MobiDBLite consensus disorder prediction 162 211 - -
Viun1g03373 211 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Viun1g03373 211 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 30 174 - -
Viun1g03373 211 MobiDBLite consensus disorder prediction 171 187 - -
Viun1g03373 211 FunFam E3 ubiquitin-protein ligase ATL6 80 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03373 Viun-Chr1 41056710 41057345 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03373 8 156 Rapid Response to Elicitors AT3G05200 34.545 6.66e-24 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03373 K10664 - gmx:100804862 184.882