Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03367 ATGAAGAAATCTTCTTACCCTAACCCCTCCCCGACGCCCCACGCCACTCATCGCCGCCTTGATTTTCACCCTAACACACCACCACACGGCGGTTCCACTCCCCGCCCCATCACCCACCGCCCCTTCCACCAATGGAGGCCGCGCTTACACCCACATGCGGCACGCCTCCACCGTCCGCCGGAGCCTTATTTCAAGGTGGAGCTCCGCCTCGGCCTCCGCCGTCCCAGCCGCGACGACATCGTGGCCCTGATCAAAGAATGCGAGCACAAACCGCAGTCTTTTACCTTTTACCCCGTCGACGACGTCGCTGCCGCGCTCAGTTACCGGAATTGGGAGGAGGCGTGCGACGCAGCCGCTTGGTTCTGGGAGTCGCTGCTGTTGGAGAAGCACGATTACACGCCGGAGATGGACTCCAACGTTTCGGTGACGGACAGTCTGGATGGTCGCCTTCGAGTGTTGTTCACGAGGCACGTGATGAAGGTGATGGAGGGGAAGGAGGTTAAGCGGTGGGTGGAGGAGAGTGAACGGTTGTCAAAGGAAATTGAGAGGGTTTCAACTTTGCTGGGTAAGCACTTGCATATTGACTTGAGTAACCACTATATTGAGCAGAGGAAAGGGCTCGTTGTTGAGAAAATCCAGGTTGAAAGGAGGTTGAAGGAGTTCGACTCTGCGATGGATTGTATACTGAAGTATCTGGCGGAGGACGCTGACGTGGAGGGTGCCGACGTGGAGGGTGATCGGAGTGTGAATGTGTTCAAGTTTGATGGATGTTTTGATTGGAAGCGCATTCACTGTCTGATCAGAAGGGAGTGTCGGAGACTGGAGGATGGATTGCCCATTTATGCTTACCGGAAGGATATTCTTCGGGAAATACATTATCAGCAGATGATGGTATTAATTGGAGAGACTGGTTCTGGAAAGAGTACACAGTTAGTTCAGTTTCTTGCTGATTCTGGCATTGGTGCCGATGAATCCATTGTATGCACACAACCTCGCAAGATTGCTGCCAAATCAGTGGCTCAACGGGTCCAGGAAGAAAGCAGTGGATGTTACGAAGGGCAGTCAATCAAATGTTCTACGTTTTCATCCATGAATGAGTTTGATTCCAGGATAATATTCATGACAGATCACTCTTTATTGCAGCACTACATGAGTGATAATAATTTGTCTGGGATCTCGTGCATCATAATTGATGAGGCTCACGAGAGGAGCTTAAATACAGATTTACTGATGACTTTGTTGAAGAATTTACTTTATAGGAGGGGTGAGATGCGGCTTATCATTATGTCTGCTACAGCTGATGCAAAACAGCTATCGGATTACTTTTATGGTTGTGGAATTTTTCGTGTGCATGGGAGAAGTTTTCCAGTGGATATCAAATATGCTCCTTCTGACCATGCTGGGTATTCTGGTTCTTCTGCTGTTGCCTCGTATGTTTCTGATGTTGTCAGAAAGGCAACCGAGGTTCATAGAACAGAGGAAGAGGGAACTATCCTTGCCTTTTTGACATCTCAGATAGAAGTAGAATATGCCTGTGAGAAGTTTCAGGTACCCTCTGCAGTTGCCCTGCCCTTACATGGAAAACTTTCATCTGAAGAGCAATTTCGTGTTTTTCAGAACTACCCTGGAAAGAGAAAAGTGATATTTTCAACAAATCTTGCTGAGACCTCACTGACAATTCCTGGTGTTAAGTATGTGATTGATTCTGGTTTAGTTAAAGACTGCAGATATGATCCTGGCAGTGGGATGAATGTACTTAAGGTTTGCTGGATTAGTCAGAGCTCTGCTGATCAACGGGCTGGTCGTGCTGGGAGGACTGAGCCTGGTGTGTGCTATAGGCTGTATTCAGAAACTGATTATCAATCAATGGACCTAAATCAAGAGCCAGAGATTCGGCGAGTTCATCTTGGTGTAGCAGTTTTGAGGATCCTGGCTCTAGGAGTGAAGAATATTCAGGATTTTGATTTTGTGGATGCTCCCAGTTCTAGCTCTATTGATATAGCAATCAGGAATCTAATTCAGTTACGAGCAATTGAGATGAAAAATGATGTTCTTGAATTAACGCCAGAGGGTTGGTGCCTGGTAAAATTGGGAATTGAACCCAGGCTTGGTAAACTTATTCTTGGCTGTTTCAAACATGGTTTGGGTAGGGAAGGTGTTGTTCTGGCTGCTGTGATGGCCAATGCTAGTAGCATATTTTGCAGAGTTGGCAGTGAATTTGAAAAGCGAAGATCCGATTGTCTTAAAGTGCAATTTTGCCATTGTGATGGTGACCTCTTTACTCTTCTCTCCGTGTACAAGGAATGGGAAGCTTTGCCTTTGGAAAGGAGGAACAGGTGGTGTTGGGAAAACAGCATCAATGCTAAGTCCGTGAGGAGGTGCCAAGACACAATTTTGGAGTTAGAAAGTTGCCTTGAGCGTGAACATAACCTCGTTATTCCTAGTTATTGGCTTTGGGACCCTTGTACACCCTCTAGTTATGATAAGAATTTGAAGAGGGTTATACTGTCCTCACTTGCTGAGAATGTAGCCATGTACTCTGGCTGTAATCAACTTGGTTATGAAGTGGCCCAAACTGGGCAACATGTTCAACTGCATCCATCATGTTCATTGCTTGTTTTTGCTCAGAAACCAAGTTGGGTGGTTTTTGGTGAGCTTCTTTCCATCTCTAATCAATATTTGGTCTGCGTGAGCACATTTGACTTTCAATCATTATATGACCTTTGCCCAGCTCCCTTGTTTGATGTATCTAAAATGGTGGAGCGGAAATTGCAAATGAAGACATTGTGTGGTCTTGGCTGTATTCTTCTCAAGAGATTTTGTGGAAAAGCCAATTGTAATTTGTTTGCTCTTGTTTCACGTATAAGGAAAGCTTGTGTGGATGAACGTATCTACATTGAAGTGAATGTTGACCAGAATGCAATCCACTTATTTGCCACTTCAAATGATATGGATACAGCCCTTGCGTTGGTTCATGACGCTGTAGAATATGAGAGAAAGTTGTTACGCGCTGAATGTATGGATAAGTTTTTGTATCATGGGTCTGGTATTCCGTCACCTATAGCTTTGTTTGGGTCTGGTGCTGAGATAAAACATTTGGAACTTGAGAAACGTTCCTTGAGTATTGAGGTGTGTCATGCAAACATAAATGCAATTGATGACAAGGAGCTCTTAATGTTTTTAGAGAAGAATACCTCTGGTAGCATCTGTGCTGTGCACAAATTTGCAGGCAATGTGAAGGATGAAGATAAAGAAAAGTGGGGCAGGATAATTTTTACGTCCCCTGAATTTGTCAAAAGAGCCACTGAACTAGATGGACATGAGTTTTGTGGCTCCTCCTTGAAAATTTTCCCTTCGCAGTTGGGAGGGGATAAAACATTTTCGTTCCCTGCTGTTAAAGCAAAAGTTTATTGGCCTCGTAGGCTTAGCAGGGGATTTGCCATAGTTAAATGTGATATAAAGGATGTCAATCATATGTTGAGAGATTTCTACAACCTTGCAATAGGGGGAAGGTATGTTCGATGTGAAGTTGGCAAAAAGAGTATGGACAGTGTTGTCATAAATGGGCTTGGCAAAGATCTCTCGGAAGCTGAAATACTGGATGTGCTAAGAACTGCTACAAGCAGGAGGATTTTGGATTTTTTCTTGGTGAGAGGGGATGCTGTTGAAAACCCACCATGCAGTGTTTTGGAGAAGGCACTGTTGAAGGAAATTTACCCCTCTTTGCCCAAAAAGGACCCGCACATTAGTTCTTGCCGAGTTCAGGTGTTTGTACCTGAGCCTAAGGATACCTTTATGAGAGCTTTAATCAGTTTCGATGGAAGATTGCATTTAGAGGCAGCAAAAGCTTTGGAGGATATTGAAGGAAAGGTGTTAGATGGATGTCTATCATGGCAAAAGATAAAGTGCCAGCGGTTGTTTCATAGCTCCTTGATATTTCCTACACCAGTGTTTCGTGTGATTAGGGAACAACTGGATGGAGTACTTGCAAACTTCAGGAATTTAAGAGGTCTTGAATGCAACCTGGACAGGACAGTTAATGGTTCCCACCGAGTCAAGATAACTGCGAACGCCACAAGGACAGTGGCAGAAGTTAGAAGACCTCTGGAAGAACTATGGAGAGGGAAAACCATTGAGCATGACAGTCTCACTCCTGCAGTTCTCCAGCTCATGATGTCCAAGGATGGGTTTAATCTTAAAAACTCATTGCAGCAGGAGACAGGAACTTATATTCTTTTTGACAGGCACAACTTGAATTTACGTGTGTTTGGTTCCCCAGACAAGGTTGCTTTGGCTCATGACAAGGTGATTCAATCCCTCCTCTCTCTCCATGAAGAAAAGCAGTTAGAAATCCATCTGAGAGGGAGGGATTTACCTCCTGATTTAATGAAGCAATTGATTAAAAAGTTTGGACCAGATCTGCATGGACTGAAAGAAAGGGTACCTGGGGTAGATCTTAAGCTCAACATAAGTCGCCATGTAATCAGTCTTAATGGTAGGAAGGAGTTGAAAACCAGGGTAGAGGAAATAATATTTGAGATTGCTCGTTCAAGCCATCATTTGGTTGGGACGTTTGATAATGATGGTCCTAATTGCCCGATTTGCTTGTGCGAGGTTGAGGATCCATTCCGGCTTGAAGGCTGTGGTCATTTGTTCTGCCGGTCGTGTCTGGTGGAACAATGTGAATCTGCTATTAAAAACCAAGACAGCTTCCCAATACGTTGTAGTCACAAGGACTGTGGAGATCTCATCCTGCTTACAGATCTTAGATCTCTCTTATTTAGCGATAAGTTGGAGGATCTTTTCAGGGCTTCATTGGGAGATTTTGTTGCTAAGAGTGGGGGAACTTACAGGTTTTGCCCTTCTCCAGACTGCCCCTCAATTTATCGAGTTGCAGATCCTGAGACTGCTGGTGAGCCATTTGTTTGTGGGTCTTGTTATTCAGAGATATGTAGCAGGTGCCACTTAGAGTATCATGCTTTCTTTTCATGCGAGAGATATAAAGAGTTTAAGGAAGAAGATCGATCTGTGATAGATTGGTCCAGAGGCAAGGACGATGTTAAGAGTTGCTTGGCGTGTGGGCTTGTAATTCAGAAGGTGGATGGGTGCAACCATGTTCTGTGCATGTGTGGAAAGCATGTGTGTTGGGTTTGCTTAGAGTTCTTCGGTGGTAGTGATGAATGTTATAGCCATTTGAGAAATGTGCACACGACTATAATATAA 5223 0.4453 MKKSSYPNPSPTPHATHRRLDFHPNTPPHGGSTPRPITHRPFHQWRPRLHPHAARLHRPPEPYFKVELRLGLRRPSRDDIVALIKECEHKPQSFTFYPVDDVAAALSYRNWEEACDAAAWFWESLLLEKHDYTPEMDSNVSVTDSLDGRLRVLFTRHVMKVMEGKEVKRWVEESERLSKEIERVSTLLGKHLHIDLSNHYIEQRKGLVVEKIQVERRLKEFDSAMDCILKYLAEDADVEGADVEGDRSVNVFKFDGCFDWKRIHCLIRRECRRLEDGLPIYAYRKDILREIHYQQMMVLIGETGSGKSTQLVQFLADSGIGADESIVCTQPRKIAAKSVAQRVQEESSGCYEGQSIKCSTFSSMNEFDSRIIFMTDHSLLQHYMSDNNLSGISCIIIDEAHERSLNTDLLMTLLKNLLYRRGEMRLIIMSATADAKQLSDYFYGCGIFRVHGRSFPVDIKYAPSDHAGYSGSSAVASYVSDVVRKATEVHRTEEEGTILAFLTSQIEVEYACEKFQVPSAVALPLHGKLSSEEQFRVFQNYPGKRKVIFSTNLAETSLTIPGVKYVIDSGLVKDCRYDPGSGMNVLKVCWISQSSADQRAGRAGRTEPGVCYRLYSETDYQSMDLNQEPEIRRVHLGVAVLRILALGVKNIQDFDFVDAPSSSSIDIAIRNLIQLRAIEMKNDVLELTPEGWCLVKLGIEPRLGKLILGCFKHGLGREGVVLAAVMANASSIFCRVGSEFEKRRSDCLKVQFCHCDGDLFTLLSVYKEWEALPLERRNRWCWENSINAKSVRRCQDTILELESCLEREHNLVIPSYWLWDPCTPSSYDKNLKRVILSSLAENVAMYSGCNQLGYEVAQTGQHVQLHPSCSLLVFAQKPSWVVFGELLSISNQYLVCVSTFDFQSLYDLCPAPLFDVSKMVERKLQMKTLCGLGCILLKRFCGKANCNLFALVSRIRKACVDERIYIEVNVDQNAIHLFATSNDMDTALALVHDAVEYERKLLRAECMDKFLYHGSGIPSPIALFGSGAEIKHLELEKRSLSIEVCHANINAIDDKELLMFLEKNTSGSICAVHKFAGNVKDEDKEKWGRIIFTSPEFVKRATELDGHEFCGSSLKIFPSQLGGDKTFSFPAVKAKVYWPRRLSRGFAIVKCDIKDVNHMLRDFYNLAIGGRYVRCEVGKKSMDSVVINGLGKDLSEAEILDVLRTATSRRILDFFLVRGDAVENPPCSVLEKALLKEIYPSLPKKDPHISSCRVQVFVPEPKDTFMRALISFDGRLHLEAAKALEDIEGKVLDGCLSWQKIKCQRLFHSSLIFPTPVFRVIREQLDGVLANFRNLRGLECNLDRTVNGSHRVKITANATRTVAEVRRPLEELWRGKTIEHDSLTPAVLQLMMSKDGFNLKNSLQQETGTYILFDRHNLNLRVFGSPDKVALAHDKVIQSLLSLHEEKQLEIHLRGRDLPPDLMKQLIKKFGPDLHGLKERVPGVDLKLNISRHVISLNGRKELKTRVEEIIFEIARSSHHLVGTFDNDGPNCPICLCEVEDPFRLEGCGHLFCRSCLVEQCESAIKNQDSFPIRCSHKDCGDLILLTDLRSLLFSDKLEDLFRASLGDFVAKSGGTYRFCPSPDCPSIYRVADPETAGEPFVCGSCYSEICSRCHLEYHAFFSCERYKEFKEEDRSVIDWSRGKDDVKSCLACGLVIQKVDGCNHVLCMCGKHVCWVCLEFFGGSDECYSHLRNVHTTII 1740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03367 1740 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 271 784 IPR027417 -
Viun1g03367 1740 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 1660 1737 - -
Viun1g03367 1740 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 288 451 IPR014001 -
Viun1g03367 1740 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1528 1607 IPR013083 -
Viun1g03367 1740 CDD DEXHc_RHA-like 295 450 - -
Viun1g03367 1740 SUPERFAMILY RING/U-box 1528 1593 - -
Viun1g03367 1740 SUPERFAMILY RING/U-box 1684 1733 - -
Viun1g03367 1740 ProSitePatterns Zinc finger C2H2 type domain signature. 1715 1736 IPR013087 -
Viun1g03367 1740 Pfam DEAD/DEAH box helicase 285 438 IPR011545 GO:0003676|GO:0005524
Viun1g03367 1740 ProSiteProfiles Zinc finger RING-type profile. 1532 1575 IPR001841 -
Viun1g03367 1740 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 393 402 IPR002464 -
Viun1g03367 1740 Pfam IBR domain, a half RING-finger domain 1610 1664 IPR002867 GO:0008270
Viun1g03367 1740 Gene3D - 1662 1738 - -
Viun1g03367 1740 Gene3D - 266 453 IPR027417 -
Viun1g03367 1740 Pfam RING-type zinc-finger 1532 1575 IPR027370 -
Viun1g03367 1740 SMART ha2_5 667 763 IPR007502 GO:0004386
Viun1g03367 1740 ProSitePatterns Zinc finger RING-type signature. 1548 1557 IPR017907 -
Viun1g03367 1740 PANTHER ATP-DEPENDENT RNA HELICASE 266 905 - -
Viun1g03367 1740 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 481 647 IPR001650 -
Viun1g03367 1740 CDD SF2_C_RHA 455 615 - -
Viun1g03367 1740 SMART ibrneu5 1596 1664 IPR002867 GO:0008270
Viun1g03367 1740 SMART ibrneu5 1665 1728 IPR002867 GO:0008270
Viun1g03367 1740 MobiDBLite consensus disorder prediction 1 42 - -
Viun1g03367 1740 Gene3D - 629 672 IPR042035 -
Viun1g03367 1740 ProSiteProfiles TRIAD supradomain profile. 1528 1735 IPR044066 -
Viun1g03367 1740 SMART helicmild6 509 607 IPR001650 -
Viun1g03367 1740 FunFam RBR-type E3 ubiquitin transferase 650 756 - -
Viun1g03367 1740 Gene3D - 454 626 IPR027417 -
Viun1g03367 1740 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 831 910 IPR011709 -
Viun1g03367 1740 CDD BRcat_RBR 1616 1667 - -
Viun1g03367 1740 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 261 453 - -
Viun1g03367 1740 Pfam Helicase conserved C-terminal domain 490 606 IPR001650 -
Viun1g03367 1740 FunFam ATP-dependent RNA helicase DEAH12 chloroplastic 454 626 - -
Viun1g03367 1740 CDD Rcat_RBR_DEAH12-like 1686 1736 - -
Viun1g03367 1740 Pfam Helicase associated domain (HA2) 668 762 IPR007502 GO:0004386
Viun1g03367 1740 SMART ultradead3 276 460 IPR014001 -
Viun1g03367 1740 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 629 672 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03367 Viun-Chr1 41029797 41036527 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03367 1544 1732 ARIADNE family AT3G27710 31.959 1.11e-14 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03367 K12818 - gmx:100810008 2893.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03367 1 41029797 41036527 Viun1g03367 1 41029797 41036527 ECH