Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03366 ATGAAGAGACTTAGCAGCTCAGATTCTCCTTCCACTCCCCTCATCACAATTTGTCCCTCAACAACAGAAGAACACGGTACGAGAAACTGCCAGCAGCACGTGTATGGTAGGGAGTTCCAATCGATGATGCTCGAGGGGCTTGACGAGGAAGGGTGTGTTGATGAAGTGGGACATCAATCTGAGAAAAAACGGCGTCTGAGTATAGATCAAGTGAAGGCTTTGGAGAAGAACTTCGAGGTTGAAAACAAGCTTGAACCTGAGAGGAAGGTCAAACTTGCCCAGGAACTTGGGTTGCAACCTAGACAAGTAGCTGTCTGGTTCCAAAACCGTCGAGCAAGGTGGAAAACCAAACAATTGGAGAGAGATTACGGTGTTCTCAAAGCCAATTTTGATGCCCTCAAGCTTAACTATGACACCCTCAATCACGATAACGAAGCTTTACGGAAGCAGATAAAGGAGCTGAAATCGAGGCTGGAAGAAGAGAACACTGGAAGCGGCGGGGTTTCCGTGAAGGAGGAGATAATGATGCCTGATTCGGAGGACAAAACAACGATGGAACAAAGTAAGAGCGAGCCGAGTTCGGAATCCGAGGATCAGTTGAAGTACGAGTGTTTCAACGCCAACAACAACAACAACGGTTGTTTCGTAGGCGCTTCGCTGTTCCCGGTGGACTTCAAAGACGGTTCTTCCGACAGCGATTCGAGCGCGATCTTGAACGAAGAGAACCACTGCAGCCCCATAACCGAACATCTGTTGCTGTCACCGGAATCTTCGTCGATGAACTGTTTGCAGTTTCAGAAAGCGTATCAGGCGCAGTACGTGGTGAAGATGGAGGAGCACAACTTCTTCAGCGCCGACGAGGCCTGCAATTTCTTTTCTGATGAACAAGCTCCAACGTTGCAGTGGTGGAACTGA 915 0.4874 MKRLSSSDSPSTPLITICPSTTEEHGTRNCQQHVYGREFQSMMLEGLDEEGCVDEVGHQSEKKRRLSIDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANFDALKLNYDTLNHDNEALRKQIKELKSRLEEENTGSGGVSVKEEIMMPDSEDKTTMEQSKSEPSSESEDQLKYECFNANNNNNGCFVGASLFPVDFKDGSSDSDSSAILNEENHCSPITEHLLLSPESSSMNCLQFQKAYQAQYVVKMEEHNFFSADEACNFFSDEQAPTLQWWN 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03366 304 SUPERFAMILY Homeodomain-like 46 119 IPR009057 -
Viun1g03366 304 PRINTS Lambda-repressor HTH signature 88 97 IPR000047 GO:0003677
Viun1g03366 304 PRINTS Lambda-repressor HTH signature 97 113 IPR000047 GO:0003677
Viun1g03366 304 FunFam Homeobox-leucine zipper protein HAT5 55 119 - -
Viun1g03366 304 Gene3D - 56 124 - -
Viun1g03366 304 Pfam Homeobox associated leucine zipper 117 158 IPR003106 GO:0006355|GO:0043565
Viun1g03366 304 SMART HOX_1 60 121 IPR001356 GO:0003677
Viun1g03366 304 MobiDBLite consensus disorder prediction 174 198 - -
Viun1g03366 304 MobiDBLite consensus disorder prediction 1 24 - -
Viun1g03366 304 Coils Coil 130 164 - -
Viun1g03366 304 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 45 277 IPR045224 GO:0003700
Viun1g03366 304 CDD homeodomain 62 118 IPR001356 GO:0003677
Viun1g03366 304 Pfam Homeodomain 62 115 IPR001356 GO:0003677
Viun1g03366 304 ProSiteProfiles 'Homeobox' domain profile. 57 117 IPR001356 GO:0003677
Viun1g03366 304 ProSitePatterns 'Homeobox' domain signature. 92 115 IPR017970 GO:0000981|GO:0006355
Viun1g03366 304 MobiDBLite consensus disorder prediction 157 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03366 Viun-Chr1 41002865 41005197 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03366 1 304 Homeobox Transcription Factor Family AT4G40060 45.768 1.53e-70 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Viun1g03366 Homeodomain 3.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03366 K09338 - gmx:100777924 405.986