Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03365 ATGAAGAGACTTAGCAGCTCAGATTCTCCTTCCACTCCCCTCATCACAATTTGTCCCTCAACAACAGAACACGGTACGAGAAACTGCCAGCAGCACGTGTATGGTAGGGAGTTCCAATCGATGATGCTCGAGGGGCTTGACGAGGAAGGGTGTGTTGATGAAGTGGGACATCAATCTGAGAAAAAACGGCGTCTGAGTATAGATCAAGTGAAGGCTTTGGAGAAGAACTTCGAGGTTGAAAACAAGCTTGAACCTGAGAGGAAGGTCAAACTTGCCCAGGAACTTGGGTTGCAACCTAGACAAGTAGCTGTCTGGTTCCAAAACCGTCGAGCAAGGTGGAAAACCAAACAATTGGAGAGAGATTACGGTGTTCTCAAAGCCAATTTTGATGCCCTCAAGCTTAACTATGACACCCTCAATCACGATAACGAAGCTTTACGGAAGCAGATAAAGGAGCTGAAATCGAGGCTGGAAGAAGAGAACACTGGAAGCGGCGGGGTTTCCGTGAAGGAGGAGATAATGATGCCTGATTCGGAGGACAAAACAACGATGGAACAAAGTAAGAGCGAGCCGAGTTCGGAATCCGAGGATCAGTTGAAGTACGAGTGTTTCAACGCCAACAACAACAACAACGGTTGTTTCGTAGGCGCTTCGCTGTTCCCGGTGGACTTCAAAGACGGTTCTTCCGACAGCGATTCGAGCGCGATCTTGAACGAAGAGAACCACTGCAGCCCCATAACCGAACATCTGTTGCTGTCACCGGAATCTTCGTCGATGAACTGTTTGCAGTTTCAGAAAGCGTATCAGGCGCAGTACGTGGTGAAGATGGAGGAGCACAACTTCTTCAGCGCCGACGAGGCCTGCAATTTCTTTTCTGATGAACAAGCTCCAACGTTGCAGTGGTGGAACTGA 912 0.4879 MKRLSSSDSPSTPLITICPSTTEHGTRNCQQHVYGREFQSMMLEGLDEEGCVDEVGHQSEKKRRLSIDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANFDALKLNYDTLNHDNEALRKQIKELKSRLEEENTGSGGVSVKEEIMMPDSEDKTTMEQSKSEPSSESEDQLKYECFNANNNNNGCFVGASLFPVDFKDGSSDSDSSAILNEENHCSPITEHLLLSPESSSMNCLQFQKAYQAQYVVKMEEHNFFSADEACNFFSDEQAPTLQWWN 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03365 303 ProSiteProfiles 'Homeobox' domain profile. 56 116 IPR001356 GO:0003677
Viun1g03365 303 SMART HOX_1 59 120 IPR001356 GO:0003677
Viun1g03365 303 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 52 276 IPR045224 GO:0003700
Viun1g03365 303 MobiDBLite consensus disorder prediction 156 198 - -
Viun1g03365 303 SUPERFAMILY Homeodomain-like 45 118 IPR009057 -
Viun1g03365 303 FunFam Homeobox-leucine zipper protein HAT5 54 118 - -
Viun1g03365 303 ProSitePatterns 'Homeobox' domain signature. 91 114 IPR017970 GO:0000981|GO:0006355
Viun1g03365 303 Gene3D - 55 123 - -
Viun1g03365 303 PRINTS Lambda-repressor HTH signature 87 96 IPR000047 GO:0003677
Viun1g03365 303 PRINTS Lambda-repressor HTH signature 96 112 IPR000047 GO:0003677
Viun1g03365 303 MobiDBLite consensus disorder prediction 173 197 - -
Viun1g03365 303 Pfam Homeobox associated leucine zipper 116 157 IPR003106 GO:0006355|GO:0043565
Viun1g03365 303 Coils Coil 129 163 - -
Viun1g03365 303 CDD homeodomain 61 117 IPR001356 GO:0003677
Viun1g03365 303 Pfam Homeodomain 61 114 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03365 Viun-Chr1 41002865 41005197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03365 1 303 Homeobox Transcription Factor Family AT4G40060 46.541 7.82e-70 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Viun1g03365 Homeodomain 3.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03365 K09338 - gmx:100777924 408.297
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g01054 3 6553871 6556118 Viun1g03365 1 41002865 41005197 PCT