Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03343 ATGGCAATTTCTACTTTTGCTAGTACATCAGCTACTCAATGGGGAATTCGACCTCAGATTTTTGCGGGATCGACTGGGATGGGGAAGATTGCATCATTCAAGAACAATGTCTCAAGCAAGCTAAGCTTCATGTCTGCCCCAAATTCAAGCTTCTTTTCCCGAGATTCCTCGCGTGCACTTTTTGACAAAGTTTCTTTGCAAAATTTACATGGTCGCCGGGGATCAAGGTTGATAGTTAGAGCTGATGCTGATTACTATTCTATCCTTGGGGTCTCAAAAAATTCTAGTAAATCTGAAATTAAGAGTGCATATCGGAAGCTTGCCCGGAGTTATCATCCTGATGTGAACAAAGAACCTGATGCAGAAAAGAAGTTTAAAGAAATTAGTAATGCATACGAGGTCTTGTCAGATGATGAGAAAAGATCCATATATGATACATATGGAGAGGCTGGTCTTAAAGGTTCAGGAATGGGCATGGGGGATTTCAGCAATCCTTTTGACCTGTTTGAGACACTGTTTGAGGGCATGGGTGGCATGGGGGGCAGCAGAAGTTCTTGGAATGGAGCAGTTGAAGGTGAAGATGAGTATTACAGTCTTGTTTTGAACTTCAAAGAAGCTGTTTTTGGGGTGGAAAAGGAGATTGAGATTCGGCGATTAGAGAACTGTGGAACTTGCAATGGTTCAGGGGCTAAACCAGGGACTAAATCATCTAAATGTAGCACTTGTGGTGGTCAGGGTCGGGTTGTTCAATCGACGAGGACTCCATTAGGCATCTTTCAGCAGTCTATGACTTGCTCTTCTTGCAATGGAGCTGGTGAAATTTCAACACCTTGCAATACATGTTCTGGGGAAGGTCGAGTGAGGAAGACAAAGCGGATAAGTATCAAGGTTCCTGCTGGTGTGGATTCTGGAAGCCGGTTAAGGGTCCGAAATGAAGGTAATGCTGGAAGGCGTGGGGGTCCTTCTGGTGACCTCTTTGTTGTTCTTGAAGTTATCCCAGATCCAGTGCTTAAACGGGATGACACAAACATTTTATACACATGTAAAATATCTTACATTGATGCAATCTTGGGGACTACTGTTAAGGTTCCTACTGTAGATGGCATGGTGGATTTAAAAATCCCAGCTGGGACTCAACCAAGCTCAACACTTGTTATGAGTAAGAAAGGTGTTCCCCTGCTGAACAAGAAGAATATGAGGGGTGATCAATTGGTTAGGGTGCAAGTTGAAATCCCCAAAAAACTGAGCAAAGACGAGAGAAAACTTGTTGAGGATCTTGCTGATTTAAGCAAGGGCAAGACTGCTGCCACCAGTGGTAGGAGATAA 1326 0.4359 MAISTFASTSATQWGIRPQIFAGSTGMGKIASFKNNVSSKLSFMSAPNSSFFSRDSSRALFDKVSLQNLHGRRGSRLIVRADADYYSILGVSKNSSKSEIKSAYRKLARSYHPDVNKEPDAEKKFKEISNAYEVLSDDEKRSIYDTYGEAGLKGSGMGMGDFSNPFDLFETLFEGMGGMGGSRSSWNGAVEGEDEYYSLVLNFKEAVFGVEKEIEIRRLENCGTCNGSGAKPGTKSSKCSTCGGQGRVVQSTRTPLGIFQQSMTCSSCNGAGEISTPCNTCSGEGRVRKTKRISIKVPAGVDSGSRLRVRNEGNAGRRGGPSGDLFVVLEVIPDPVLKRDDTNILYTCKISYIDAILGTTVKVPTVDGMVDLKIPAGTQPSSTLVMSKKGVPLLNKKNMRGDQLVRVQVEIPKKLSKDERKLVEDLADLSKGKTAATSGRR 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03343 441 FunFam Chaperone protein dnaJ 1, mitochondrial 332 439 - -
Viun1g03343 441 Gene3D DnaJ domain 81 185 IPR036869 -
Viun1g03343 441 FunFam Chaperone protein dnaJ A6 chloroplastic 81 184 - -
Viun1g03343 441 CDD DnaJ 84 137 IPR001623 -
Viun1g03343 441 Hamap Chaperone protein DnaJ [dnaJ]. 81 435 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Viun1g03343 441 Gene3D - 192 327 - -
Viun1g03343 441 CDD DnaJ_zf 222 285 IPR001305 GO:0031072|GO:0051082
Viun1g03343 441 Pfam DnaJ C terminal domain 197 412 IPR002939 -
Viun1g03343 441 FunFam Putative Mitochondrial DnaJ chaperone 276 327 - -
Viun1g03343 441 FunFam Molecular chaperone DnaJ 214 290 - -
Viun1g03343 441 CDD DnaJ_C 193 415 - -
Viun1g03343 441 ProSiteProfiles Zinc finger CR-type profile. 209 290 IPR001305 GO:0031072|GO:0051082
Viun1g03343 441 Pfam DnaJ central domain 222 285 IPR001305 GO:0031072|GO:0051082
Viun1g03343 441 ProSiteProfiles dnaJ domain profile. 84 148 IPR001623 -
Viun1g03343 441 Gene3D - 222 285 - -
Viun1g03343 441 Pfam DnaJ domain 84 145 IPR001623 -
Viun1g03343 441 PRINTS DnaJ domain signature 104 119 IPR001623 -
Viun1g03343 441 PRINTS DnaJ domain signature 120 140 IPR001623 -
Viun1g03343 441 PRINTS DnaJ domain signature 86 104 IPR001623 -
Viun1g03343 441 PRINTS DnaJ domain signature 140 159 IPR001623 -
Viun1g03343 441 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 47 435 - -
Viun1g03343 441 SUPERFAMILY HSP40/DnaJ peptide-binding domain 190 344 IPR008971 GO:0006457|GO:0051082
Viun1g03343 441 SUPERFAMILY HSP40/DnaJ peptide-binding domain 337 423 IPR008971 GO:0006457|GO:0051082
Viun1g03343 441 ProSitePatterns Nt-dnaJ domain signature. 125 144 IPR018253 -
Viun1g03343 441 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 209 289 IPR036410 -
Viun1g03343 441 SUPERFAMILY Chaperone J-domain 81 181 IPR036869 -
Viun1g03343 441 NCBIfam molecular chaperone DnaJ 84 428 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Viun1g03343 441 Gene3D - 332 440 - -
Viun1g03343 441 SMART dnaj_3 83 140 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03343 Viun-Chr1 40868766 40873451 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03343 85 147 C2H2 Transcription Factor Family AT1G74250 44.928 1.10e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03343 K03686 - gmx:100786143 777.319