Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03341 ATGGGATTCACAGGATCGTTGACACCAAGAATAGCATCCCTGAAAAGTCTCGAAACTCTTTCTTTGCAAGGTAATAACATCACTGGTGACATTCCAAAAGAATTTGGAAATCTTACAAGCTTGGTCAGATTAGATTTGGAAAACAACAAATTAACTGGTGAAATACCATATTCACTTGGTAGTCTTAGAAAGCTTCAATTCTTGACATTGAGTCAAAACAATCTTAATGGAACTATTCCAGAATCACTTGCCAGTCTCCCAAGCTTGATCAATGTTTTGCTAGATTCAAATGATCTTAGTGGGAAGATTCCGGAGCGGTTGTTCAGCATTCCTACATACAATTTCACTGGAAATAATTTGAATTGTGGAGTGAGTTATCATCATCTTTGCTCATCTGATAATGCAGTTCAAGGTTCGTCTCATAAAACAAAAGTAGGCCTCATAGTTGGAATAGTTGCAGGTTTAGTTGTTATTCTTTTTCTTGGTTGTCTGCTGTTCTTCTGGTACAAGGGGTGCAAGCGTGAAATTTTTGTAGATGTTCCAGGTGAGGTCGATCGCCGAATTACATTTGGTCAAATAAAAAGATTTTCCTGGAAAGAACTACAGATAGCTACAGACAACTTCAGCGAGAAAAATATATTAGGACAAGGAGGCTTTGGAAAGGTTTATAAAGGTGTTCTAGCAGATGGTACAAAAGTTGCTGTCAAAAGGTTAACTGATTATGAAAGTCCTGCGGGTGACGCTGCCTTCCAGCGTGAAGTGGAGTTGATAAGTGTAGCTGTCCATAGGAACCTGTTACGGCTCATTGGTTTTTGTACTACTCCAACAGAACGTCTCTTAGTTTATCCCTTCATGCAAAACTTAAGTGTTGCCTATCGTCTACGAGAACTCAGACCTGGGGAACCCGTTTTGGATTGGCCTACTAGAAAACGAGTGGCTCTAGGAACAGCTCGTGGCCTAGAATATCTTCACGAGCAGTGTAATCCTAGGATTATTCATAGGGATGTGAAGGCAGCTAATATATTACTAGATGGAGATTTTGAAGCAGTTGTTGGTGACTTTGGTTTGGCAAAATTAGTTGATGTTCGAAATACTACTGTGACAACTCAAGTTCGAGGGACAATGGGTCATATAGCTCCAGAATACTTGTCCACAGGAAAATCTTCAGAAAGGACTGATATTTTTGGTTATGGGATTATGCTTTTGGAACTTGTTACAGGTCAACGTGCTATTGACTTTTCACGTTTGGAAGAGGAGGATGACGTGTTATTGCTTGACCATGTTAAGAAACTGCAACGGGAGAAAAGGCTAGATGTTATTGTGGACAGCAACCTGAAGAAAAATTACGTAATAGGAGAGGTTGAAATGATTGTACAAATTGCATTGCTCTGCACACAAGCGTCGCCGGAGGATCGACCGGCGATGTCAGAAGTTGTAAGAATGTTAGAGGGAGAAGGGCTTGCCCAAAGATGGGAAGAATGGCAGCATGTGGAGGTTGCTACGAGGCAAGATTACGAGAGACTACAGAGAAGAATGAAGTGGGGAGAAGATTCAATGAATAACCAAGATGCCATTGAGTTGTCAGGAGGAAGATGA 1596 0.4085 MGFTGSLTPRIASLKSLETLSLQGNNITGDIPKEFGNLTSLVRLDLENNKLTGEIPYSLGSLRKLQFLTLSQNNLNGTIPESLASLPSLINVLLDSNDLSGKIPERLFSIPTYNFTGNNLNCGVSYHHLCSSDNAVQGSSHKTKVGLIVGIVAGLVVILFLGCLLFFWYKGCKREIFVDVPGEVDRRITFGQIKRFSWKELQIATDNFSEKNILGQGGFGKVYKGVLADGTKVAVKRLTDYESPAGDAAFQREVELISVAVHRNLLRLIGFCTTPTERLLVYPFMQNLSVAYRLRELRPGEPVLDWPTRKRVALGTARGLEYLHEQCNPRIIHRDVKAANILLDGDFEAVVGDFGLAKLVDVRNTTVTTQVRGTMGHIAPEYLSTGKSSERTDIFGYGIMLLELVTGQRAIDFSRLEEEDDVLLLDHVKKLQREKRLDVIVDSNLKKNYVIGEVEMIVQIALLCTQASPEDRPAMSEVVRMLEGEGLAQRWEEWQHVEVATRQDYERLQRRMKWGEDSMNNQDAIELSGGR 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03341 531 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 8 130 - -
Viun1g03341 531 ProSitePatterns Protein kinases ATP-binding region signature. 214 236 IPR017441 GO:0005524
Viun1g03341 531 ProSiteProfiles Protein kinase domain profile. 208 487 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g03341 531 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 1 493 - -
Viun1g03341 531 Gene3D Ribonuclease Inhibitor 1 132 IPR032675 -
Viun1g03341 531 Gene3D Transferase(Phosphotransferase) domain 1 285 502 - -
Viun1g03341 531 FunFam Somatic embryogenesis receptor-like kinase 1 285 502 - -
Viun1g03341 531 Pfam Leucine rich repeat 13 51 IPR001611 GO:0005515
Viun1g03341 531 Pfam Protein kinase domain 209 480 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g03341 531 SUPERFAMILY L domain-like 2 121 - -
Viun1g03341 531 SUPERFAMILY Protein kinase-like (PK-like) 187 483 IPR011009 -
Viun1g03341 531 SMART serkin_6 208 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g03341 531 ProSitePatterns Serine/Threonine protein kinases active-site signature. 331 343 IPR008271 GO:0004672|GO:0006468
Viun1g03341 531 FunFam Somatic embryogenesis receptor kinase 1 177 284 - -
Viun1g03341 531 Gene3D Phosphorylase Kinase; domain 1 177 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03341 Viun-Chr1 40858898 40865364 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03341 1 531 Receptor kinase-like Gene Family AT5G10290 75.888 0.0 801
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Viun1g03341 Pkinase 2.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03341 - - gmx:100786654 954.896