Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03340 ATGGATTTGGCATTTGTTCTTTTGCTATTGACTAGTGTGTGCTCTTCTGCGTTGGCTGGGCTTGATTCACAAGAAGATGCGCTGTATGCGTTGAAGTTATCATTGAATGCTTCTCCCAGCCAGCTTACAAACTGGAATAAAAATCTAGTTGACCCTTGTACTTGGTCAAATGTTGAATGTGACCAGAATAACAACGTTATTCGAGTTTCACTAGAATTTATGGGATTCACAGGATCGTTGACACCAAGAATAGCATCCCTGAAAAGTCTCGAAACTCTTTCTTTGCAAGGTAATAACATCACTGGTGACATTCCAAAAGAATTTGGAAATCTTACAAGCTTGGTCAGATTAGATTTGGAAAACAACAAATTAACTGGTGAAATACCATATTCACTTGGTAGTCTTAGAAAGCTTCAATTCTTGACATTGAGTCAAAACAATCTTAATGGAACTATTCCAGAATCACTTGCCAGTCTCCCAAGCTTGATCAATGTTTTGCTAGATTCAAATGATCTTAGTGGGAAGATTCCGGAGCGGTTGTTCAGCATTCCTACATACAATTTCACTGGAAATAATTTGAATTGTGGAGTGAGTTATCATCATCTTTGCTCATCTGATAATGCAGTTCAAGGTTCGTCTCATAAAACAAAAGTAGGCCTCATAGTTGGAATAGTTGCAGGTTTAGTTGTTATTCTTTTTCTTGGTTGTCTGCTGTTCTTCTGGTACAAGGGGTGCAAGCGTGAAATTTTTGTAGATGTTCCAGGTGAGGTCGATCGCCGAATTACATTTGGTCAAATAAAAAGATTTTCCTGGAAAGAACTACAGATAGCTACAGACAACTTCAGCGAGAAAAATATATTAGGACAAGGAGGCTTTGGAAAGGTTTATAAAGGTGTTCTAGCAGATGGTACAAAAGTTGCTGTCAAAAGGTTAACTGATTATGAAAGTCCTGCGGGTGACGCTGCCTTCCAGCGTGAAGTGGAGTTGATAAGTGTAGCTGTCCATAGGAACCTGTTACGGCTCATTGGTTTTTGTACTACTCCAACAGAACGTCTCTTAGTTTATCCCTTCATGCAAAACTTAAGTGTTGCCTATCGTCTACGAGAACTCAGACCTGGGGAACCCGTTTTGGATTGGCCTACTAGAAAACGAGTGGCTCTAGGAACAGCTCGTGGCCTAGAATATCTTCACGAGCAGTGTAATCCTAGGATTATTCATAGGGATGTGAAGGCAGCTAATATATTACTAGATGGAGATTTTGAAGCAGTTGTTGGTGACTTTGGTTTGGCAAAATTAGTTGATGTTCGAAATACTACTGTGACAACTCAAGTTCGAGGGACAATGGGTCATATAGCTCCAGAATACTTGTCCACAGGAAAATCTTCAGAAAGGACTGATATTTTTGGTTATGGGATTATGCTTTTGGAACTTGTTACAGGTCAACGTGCTATTGACTTTTCACGTTTGGAAGAGGAGGATGACGTGTTATTGCTTGACCATGTTAAGAAACTGCAACGGGAGAAAAGGCTAGATGTTATTGTGGACAGCAACCTGAAGAAAAATTACGTAATAGGAGAGGTTGAAATGATTGTACAAATTGCATTGCTCTGCACACAAGCGTCGCCGGAGGATCGACCGGCGATGTCAGAAGTTGTAAGAATGTTAGAGGGAGAAGGGCTTGCCCAAAGATGGGAAGAATGGCAGCATGTGGAGGTTGCTACGAGGCAAGATTACGAGAGACTACAGAGAAGAATGAAGTGGGGAGAAGATTCAATGAATAACCAAGATGCCATTGAGTTGTCAGGAGGAAGATGA 1815 0.4072 MDLAFVLLLLTSVCSSALAGLDSQEDALYALKLSLNASPSQLTNWNKNLVDPCTWSNVECDQNNNVIRVSLEFMGFTGSLTPRIASLKSLETLSLQGNNITGDIPKEFGNLTSLVRLDLENNKLTGEIPYSLGSLRKLQFLTLSQNNLNGTIPESLASLPSLINVLLDSNDLSGKIPERLFSIPTYNFTGNNLNCGVSYHHLCSSDNAVQGSSHKTKVGLIVGIVAGLVVILFLGCLLFFWYKGCKREIFVDVPGEVDRRITFGQIKRFSWKELQIATDNFSEKNILGQGGFGKVYKGVLADGTKVAVKRLTDYESPAGDAAFQREVELISVAVHRNLLRLIGFCTTPTERLLVYPFMQNLSVAYRLRELRPGEPVLDWPTRKRVALGTARGLEYLHEQCNPRIIHRDVKAANILLDGDFEAVVGDFGLAKLVDVRNTTVTTQVRGTMGHIAPEYLSTGKSSERTDIFGYGIMLLELVTGQRAIDFSRLEEEDDVLLLDHVKKLQREKRLDVIVDSNLKKNYVIGEVEMIVQIALLCTQASPEDRPAMSEVVRMLEGEGLAQRWEEWQHVEVATRQDYERLQRRMKWGEDSMNNQDAIELSGGR 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03340 604 Pfam Leucine Rich repeats (2 copies) 88 125 IPR025875 -
Viun1g03340 604 FunFam Putative LRR receptor-like serine/threonine-protein kinase 21 205 - -
Viun1g03340 604 SMART serkin_6 281 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g03340 604 FunFam Somatic embryogenesis receptor-like kinase 1 358 575 - -
Viun1g03340 604 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 5 566 - -
Viun1g03340 604 FunFam Somatic embryogenesis receptor kinase 1 250 357 - -
Viun1g03340 604 Gene3D Transferase(Phosphotransferase) domain 1 358 575 - -
Viun1g03340 604 ProSiteProfiles Protein kinase domain profile. 281 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g03340 604 Pfam Protein kinase domain 282 553 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g03340 604 Pfam Leucine rich repeat N-terminal domain 22 61 IPR013210 -
Viun1g03340 604 SUPERFAMILY Protein kinase-like (PK-like) 260 556 IPR011009 -
Viun1g03340 604 Gene3D Ribonuclease Inhibitor 21 205 IPR032675 -
Viun1g03340 604 SUPERFAMILY L domain-like 23 194 - -
Viun1g03340 604 ProSitePatterns Serine/Threonine protein kinases active-site signature. 404 416 IPR008271 GO:0004672|GO:0006468
Viun1g03340 604 ProSitePatterns Protein kinases ATP-binding region signature. 287 309 IPR017441 GO:0005524
Viun1g03340 604 Gene3D Phosphorylase Kinase; domain 1 250 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03340 Viun-Chr1 40858898 40865366 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03340 1 604 Receptor kinase-like Gene Family AT5G10290 72.533 0.0 874
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Viun1g03340 Pkinase 3.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03340 - - gmx:100786654 1080.47