Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03339 ATGTCCAATTTCAACTTCAACCCAAACGCAGATCCGACCCTAAATTTTAACGACCAGGATCCGAATACAACTGCAAACCCTCAGCTTCCGCTTCAGAACCTCTCCCAGGTTCGGACCAGAATTGATTCTCTACAGCACTTCCTATCTCAATCCATCAGCACCAACACTCCTCTCACCACCGATCAAATCGCTATGGTCTCCACCCACATCATCTCATCCATCCACCAAATCATCGTCAACGGTGCCGCCCTCGTAACTTACTCCCAACATTCCACCGCCGCCGTCACACCAGATGCGTCGTCGTATCCGAAGCCTGAACCATCCGCCACCGATAAAACAAAGCAACTACTCGATTCCAAACTCGAACCTCCCGAGGACGATGACGGCGTCGAAGACGATGTCGTGGATTGTGAAATCGTGGAGCTCGACGCCGTGGAACTCCTCGCGGAGCACATCCACTTCTGCGAGATCTGCGGGAAAGGCTTCCGGCGCGACGCGAATCTCCGCATGCACATGCGAGCGCACGGGGACCAGTTCAAGACTCCGGAGGCACTGGCGAGGCCGTCGGAAACCGGCGCGGCGCGGCGCGCGATGCGGTTCTCTTGTCCGTTCGAAGGCTGCAACCGGAACAAGCTCCACCGGCGGTTCCGGCCGCTGAAGTCGGTGGTGTGCTTGAAGAATCACTTCAAGCGGAGCCACTGTCCAAAGATGTATTCGTGCACCCGGTGCCACAAGAAGCACTTCTCGGTGCTCTCGGATTTGAAAAGCCACGCAAAGCACTGCGGAGAGTGCAGGTGGAAGTGCACGTGCGGGACCACGTTCTCGAGGAAGGACAAGTTGTTCGGCCACATTGCGCTGTTTGAGGGCCACGCGCCTGCGCTCGCGTGCGACGAAGAGGATAAAGGGAAGCAAGTGGCGGAGTGTGATGAAGAAAATCCAATGCTGACGACCGAAAGTGGATTTGGATTGGGTAATTGCTTTGGGGACGAGGAGTTGCCGGAAGGGTTTTTTGATGATTTTGGATCCATTGATGACTACTGTTTAAGGGAAGTTTTAGGGTTTCCGAGTAATTGA 1074 0.5484 MSNFNFNPNADPTLNFNDQDPNTTANPQLPLQNLSQVRTRIDSLQHFLSQSISTNTPLTTDQIAMVSTHIISSIHQIIVNGAALVTYSQHSTAAVTPDASSYPKPEPSATDKTKQLLDSKLEPPEDDDGVEDDVVDCEIVELDAVELLAEHIHFCEICGKGFRRDANLRMHMRAHGDQFKTPEALARPSETGAARRAMRFSCPFEGCNRNKLHRRFRPLKSVVCLKNHFKRSHCPKMYSCTRCHKKHFSVLSDLKSHAKHCGECRWKCTCGTTFSRKDKLFGHIALFEGHAPALACDEEDKGKQVAECDEENPMLTTESGFGLGNCFGDEELPEGFFDDFGSIDDYCLREVLGFPSN 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03339 357 Gene3D Classic Zinc Finger 153 176 - -
Viun1g03339 357 FunFam Zinc finger 45-like 150 176 - -
Viun1g03339 357 SUPERFAMILY beta-beta-alpha zinc fingers 150 176 IPR036236 -
Viun1g03339 357 MobiDBLite consensus disorder prediction 1 29 - -
Viun1g03339 357 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 20 306 IPR044300 GO:0010044|GO:0010447
Viun1g03339 357 SMART c2h2final6 238 260 IPR013087 -
Viun1g03339 357 SMART c2h2final6 200 233 IPR013087 -
Viun1g03339 357 SMART c2h2final6 153 175 IPR013087 -
Viun1g03339 357 ProSitePatterns Zinc finger C2H2 type domain signature. 155 175 IPR013087 -
Viun1g03339 357 MobiDBLite consensus disorder prediction 94 130 - -
Viun1g03339 357 ProSiteProfiles Zinc finger C2H2 type domain profile. 153 180 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03339 Viun-Chr1 40840112 40841424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03339 125 298 C2H2 Transcription Factor Family AT1G34370 58.242 2.57e-75 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun1g03339 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03339 - - gmx:100809135 525.013