Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03318 ATGACGCAGCAGAATGTGGTAGTGTCTGACACCAAATCTGGAGTTTCCCTAACAGTTTTTCCAACACCTGCACAAAAAAAGCCACCAGCAGCACCAGGAGGGTACATTTCTATTTCAAGGAGGAGGGTTTTGAAGAACCTTGAAATCAATGGAGACCAAAGAATCAATGCATGGGTTGAGTCCATGAGAGCCTCCTCTCCCACCCATCTTAAATCCACACCTTCTTTCTCTCAGGAGCAAAACTCTTGGATTCTTCACCACCCGTCGGCATTAGACATGTTTGACCAAATTATTGATGCGTCAAAGGGAAAACAAATTGTCATGTTCCTGGACTACGATGGCACACTTTCCCCAATTGTTGAAGATCCTGACCGTGCTTTCATGTCTCATTCGATGAGAAAAACAGTGAGGAAACTTGCTAGGTGTTTTCCTACTGCCATAGTGACCGGAAGATGCAAAGACAAGGTATACAATTTTGTTCAGTTGGCAGAGCTATATTATGCAGGAAGCCATGGCATGGATATTAAAGGGCCAACAAGAAGCTCCAAATACAACAAAGATAGCAAAGCTGAGGCAATTCTTTTTCAACCTGCCAGCGATTTTCTTCCCATGATTGATGAGGTGTACCAGCAATTGGTTGAGAAGACCAAATCAACTCCTGGAGCCATGGTTGAGAACAACAAGTTCTGCCTCTCTGTTCATTTTCGTTGTGTTGATGAAAAGAAATGGAGTGACCTGGCACGCCAAGTGAAATCAGTTTTAAAGGACTACCCGAAGCTCCGACTTACCCAAGGAAGAAAGGTGCTAGAGATTCGTCCCACTATTAAATGGGACAAAGGGAAGGCCCTGGAATTTTTATTAGAGTCCCTTGGTTTGGCCAATTGCAGTGATGTCTTTCCTGTTTATATCGGCGATGATCGATCCGATGAAGATGCTTTCAAGAAATTGAGAGAAAGAGGACAAGGTTTTGGCATTCTTGTCTCCAAATTTCCAAAAGACACGAGTGCATCTTACTCTTTACAAGAACCAAACGAGGTGATGAACTTTCTTCAACGCTTGGTGGAGTGGAAACATATGTCCCAACGAGCACGTTCCCGGGTGTAA 1104 0.4384 MTQQNVVVSDTKSGVSLTVFPTPAQKKPPAAPGGYISISRRRVLKNLEINGDQRINAWVESMRASSPTHLKSTPSFSQEQNSWILHHPSALDMFDQIIDASKGKQIVMFLDYDGTLSPIVEDPDRAFMSHSMRKTVRKLARCFPTAIVTGRCKDKVYNFVQLAELYYAGSHGMDIKGPTRSSKYNKDSKAEAILFQPASDFLPMIDEVYQQLVEKTKSTPGAMVENNKFCLSVHFRCVDEKKWSDLARQVKSVLKDYPKLRLTQGRKVLEIRPTIKWDKGKALEFLLESLGLANCSDVFPVYIGDDRSDEDAFKKLRERGQGFGILVSKFPKDTSASYSLQEPNEVMNFLQRLVEWKHMSQRARSRV 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03318 367 CDD HAD_TPP 107 348 - -
Viun1g03318 367 Pfam Trehalose-phosphatase 109 343 IPR003337 GO:0003824|GO:0005992
Viun1g03318 367 NCBIfam HAD-IIB family hydrolase 108 318 IPR006379 -
Viun1g03318 367 SUPERFAMILY HAD-like 107 356 IPR036412 -
Viun1g03318 367 FunFam Trehalose 6-phosphate phosphatase 198 274 - -
Viun1g03318 367 Gene3D - 210 366 IPR023214 -
Viun1g03318 367 Gene3D - 106 204 IPR023214 -
Viun1g03318 367 NCBIfam trehalose-phosphatase 104 354 IPR003337 GO:0003824|GO:0005992
Viun1g03318 367 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 27 362 IPR044651 GO:0004805|GO:0005992
Viun1g03318 367 FunFam Trehalose 6-phosphate phosphatase 106 193 - -
Viun1g03318 367 FunFam Trehalose 6-phosphate phosphatase 204 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03318 Viun-Chr1 40729664 40732604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03318 102 353 Trehalose Biosynthesis Gene Families AT1G70290 25.830 3.34e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03318 K01087 - gmx:100794430 687.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03318 1 40729664 40732604 Viun1g03318 1 40729664 40732604 ECH