Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03317 ATGACAACAGTTATGGATATGTACGATAACAGTAGCATCGTGCTATCAGATTTCTTAGACCCATGCAATGATCAAGAGCTTATGAAAGCGCTTGAACCTTTCATGAAAACCGATTCCTCCATAACTTACCCTTCCTTATCTTCTCCAAACTTTTCCTCAGGCTATGACCAAAAGCCTCTAAACCAAGCTAGTTCCTTCAAACTCAACCAACTCACCCCATCTCAAACATTCCAGATTCAAGCCCAAATCCAGGTTACACGAGCCCAGTTCCTCAGCCCAAAGCCCGTTCCCATGAAGCAGGTGGGTGGTGGTCGTGTTGTTTCCAGGCCCACAAAGCTTTACCGTGGGGTGAGGCAGAGGCACTGGGGCAAGTGGGTGGCTGAGATCAGACTCCCCAAGAATCGCACTCGTCTCTGGCTTGGTACATTCGAAACCGCTGAAGAAGCAGCTTTGGCATACGACAACGCAGCGTTCAAACTCAGAGGAGAAAACGCGAGGCTCAACTTCCCTCATCTACGTCACCACGGACCAAGCGTCTACGGTGAGTTTGGGACCTACAAGCCTCTCCCCTCTGCAGTGGACGCCAAGCTCCAAGCCATTTGTCAAAGCTTGGCCGTCACCACACACAAGGAAGAAACAGCAACAACATCGGAGTTTGAGGATGTTAAGGTGGGGATTCAGACAGCATCCTCGCCCTTGACGGATGAATATTCCTCCTCCTCCTCCTCTTCTTCTTCTGCTGGCTCCTCTTCACCTGAATCCGATATCACTTTCTTGGATTTCTCGGATTCTTATGAAGCAATGGACAATCTTGGGTTGGACTTGGAGAAGTACCCTTCTGTGGAGATTGATTGGGCAGCTTTATCTGAGTCATCATAG 879 0.4915 MTTVMDMYDNSSIVLSDFLDPCNDQELMKALEPFMKTDSSITYPSLSSPNFSSGYDQKPLNQASSFKLNQLTPSQTFQIQAQIQVTRAQFLSPKPVPMKQVGGGRVVSRPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFETAEEAALAYDNAAFKLRGENARLNFPHLRHHGPSVYGEFGTYKPLPSAVDAKLQAICQSLAVTTHKEETATTSEFEDVKVGIQTASSPLTDEYSSSSSSSSSAGSSSPESDITFLDFSDSYEAMDNLGLDLEKYPSVEIDWAALSESS 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03317 292 Gene3D AP2/ERF domain 113 171 IPR036955 GO:0003700|GO:0006355
Viun1g03317 292 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 20 289 - -
Viun1g03317 292 Pfam AP2 domain 114 163 IPR001471 GO:0003700|GO:0006355
Viun1g03317 292 ProSiteProfiles AP2/ERF domain profile. 113 170 IPR001471 GO:0003700|GO:0006355
Viun1g03317 292 SUPERFAMILY DNA-binding domain 113 171 IPR016177 GO:0003677
Viun1g03317 292 SMART rav1_2 113 176 IPR001471 GO:0003700|GO:0006355
Viun1g03317 292 MobiDBLite consensus disorder prediction 230 254 - -
Viun1g03317 292 PRINTS Ethylene responsive element binding protein signature 114 125 IPR001471 GO:0003700|GO:0006355
Viun1g03317 292 PRINTS Ethylene responsive element binding protein signature 136 152 IPR001471 GO:0003700|GO:0006355
Viun1g03317 292 FunFam Ethylene-responsive transcription factor 2 112 171 - -
Viun1g03317 292 CDD AP2 112 172 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03317 Viun-Chr1 40719527 40720879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03317 4 292 AP2-EREBP Transcription Factor Family AT4G39780 50.000 1.10e-78 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun1g03317 AP2 1.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03317 K09286 - gmx:106796800 400.593