Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03308 ATGGCTTCTTCAGCGATGGAAACCTGCAAATCAGAGGATTTGCACATGCAGGTGGACGTTGAGAAGAACGCAGAGGATGTAAGGTCTCAGTGGGTTCTTAACGCTCCTGAGCCCCCAAGTCCATGGCGTGTGGTTGCAGATTCTGTGAGGAAAACCATCTCTCACTATAAACAAAAGCTTTCCTCTCTCTCAGATCAACCCTGCACCACACTCCTCATGTCACTTCTGCAGCTTGTTTTTCCCATTCTTGCTTGGGGCAGAAACTACACTGCCACCAAGTTCAGGAAAGATCTTCTTGCAGGCCTCACTATTGCCAGTCTCTGTATTCCCCAGAGCATTGGATATGCAACCTTGGCACATCTTGATCCTCAATATGGACTTTATACAAGTGTGGTACCACCACTTGTGTATGCTGTGATGGGAAGTTCAAGAGAGATAGCAATTGGTCCTGTGGCAGTGGTTTCTTTGCTGTTATCCTCAATGATGGAGAAACTAGTAGACCCTGCTTCTGATCCAGTGGCTTATACGAAGCTAATTCTACTTGCTACTCTCTTGGCTGGGATCTTTCAAACATCCTTCGGACTCTTCAGGCTGGGGTTCCTTGTGGATTTCCTATCCCATGCTTCAATAGTTGGATTTGTGGGAGGAGCAGCCATCGTGATAGGGCTTCAACAGTTGAAGGGACTCTTTGGAATCACCCATTTTACGACCAAAACCGACATAGTCTCTGTCATCAAAGCTGTCTGGGAAGCAGTTCATAATCCTTGGAATCCTCGAAATTTTATCCTTGGATGCTCGTTCTTGGTCTTCATCCTAACAACGAGATTTCTGGGTAAAAAGAAGAAGAAACTGTTCTGGTTGGCATCAATTTCTCCTCTTGTATCAGTTATTTTGTCGACTCTATTTGTGTTTCTGACAAAAGCTGATAAAAATGGAGTAAAAATCGTGAAACATGTGAAAGGAGGATTAAACCCAATCTCCATCCATGAGTTAGACTTCAACAGCCCCTACATTGGTGAAGTCGCGAAAATTGCACTAGTGGTTGCTGTCGTTGCCCTTACCGAATCTATTGCTGTCGGGCGATCTTTTGCATCCATCAAAGGATACCAGCTTGATGGAAACAAGGAGATGATGTCAATAGGTCTCACAAACATCATAGGATCCTTCACCTCTTGCTACGTCGCAACTGGTTCGTTCTCCCGCACTGCTGTTAATTATGCAGCTGGGTGTGAGACTCTGGTGTCAAACATTGTGATGGCGATCACGGTGTTGGTATCGCTTCAGTTTCTGACGAAGCTCTTGTATTACACTCCTATAGCTATTCTTTCTTCTGTGATCCTTTCTGCTCTCCCAGGACTCATTGACGTCACTGAAGCTTACAAAATCTGGAAGGTTGATAAGATAGATTTTCTTGCTTGTGCTGGTGCCTTCTTCGGAGTTCTCTTTGCTTCTGTGGAGATTGGTCTTCTAGTGGCGGTGGTTATATCTTTTTCAAAGATCATTCTAATCTCAATTCGACCAGGCACAGAAACTCTTGGAAAACTTCCTGGCACTAACTTGTTCTGCGATGTGTATCAGTATCCGATGGCAGTTAAGATTCCAGGGGTTATGATAATAAGAGTCAAATCTGCGTTACTTTGCTTTGCAAATGCTAATTTCGTCAGAGAAAGGATCATCAAATGGGTCTCTGAGGAAGAATCAGAAGATGACAAGGGAAATTCAAGAAGCACCATTCAACTCGTAATTCTTGACACCTCCAATTTGGTGAACATTGACACCTCTGGAATTGCTTCTCTGGAGGAACTGCATAAGAGTTTGTCTTCACATGGAAAACAGTTAGCCATTGCGAACCCTAGGTGGCAAGTGATACACAAGCTAAAGGTGTCCAACTTTGTCTCCAAATTCGGTGGCAGAGTATTTCTCACTGTTGAAGAAGCTGTTGGCTGCAAGAGCCACTGCTAA 1962 0.4424 MASSAMETCKSEDLHMQVDVEKNAEDVRSQWVLNAPEPPSPWRVVADSVRKTISHYKQKLSSLSDQPCTTLLMSLLQLVFPILAWGRNYTATKFRKDLLAGLTIASLCIPQSIGYATLAHLDPQYGLYTSVVPPLVYAVMGSSREIAIGPVAVVSLLLSSMMEKLVDPASDPVAYTKLILLATLLAGIFQTSFGLFRLGFLVDFLSHASIVGFVGGAAIVIGLQQLKGLFGITHFTTKTDIVSVIKAVWEAVHNPWNPRNFILGCSFLVFILTTRFLGKKKKKLFWLASISPLVSVILSTLFVFLTKADKNGVKIVKHVKGGLNPISIHELDFNSPYIGEVAKIALVVAVVALTESIAVGRSFASIKGYQLDGNKEMMSIGLTNIIGSFTSCYVATGSFSRTAVNYAAGCETLVSNIVMAITVLVSLQFLTKLLYYTPIAILSSVILSALPGLIDVTEAYKIWKVDKIDFLACAGAFFGVLFASVEIGLLVAVVISFSKIILISIRPGTETLGKLPGTNLFCDVYQYPMAVKIPGVMIIRVKSALLCFANANFVRERIIKWVSEEESEDDKGNSRSTIQLVILDTSNLVNIDTSGIASLEELHKSLSSHGKQLAIANPRWQVIHKLKVSNFVSKFGGRVFLTVEEAVGCKSHC 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03308 653 ProSitePatterns SLC26A transporters signature. 123 144 IPR018045 GO:0008271|GO:0008272
Viun1g03308 653 PANTHER SULFATE TRANSPORTER 69 648 IPR001902 GO:0016020|GO:0055085
Viun1g03308 653 Pfam Sulfate permease family 94 474 IPR011547 GO:0016020
Viun1g03308 653 CDD STAS_SulP_like_sulfate_transporter 527 641 - -
Viun1g03308 653 ProSiteProfiles STAS domain profile. 546 650 IPR002645 -
Viun1g03308 653 SUPERFAMILY SpoIIaa-like 531 647 IPR036513 -
Viun1g03308 653 Pfam STAS domain 527 646 IPR002645 -
Viun1g03308 653 NCBIfam sulfate permease 81 643 IPR001902 GO:0016020|GO:0055085
Viun1g03308 653 Gene3D STAS domain 506 651 IPR036513 -
Viun1g03308 653 FunFam Sulfate transporter 31 506 652 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03308 Viun-Chr1 40658584 40664002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03308 28 647 Inorganic Solute Cotransporters AT5G10180 68.438 0.0 890
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03308 K17469 - gmx:100817831 1172.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03308 1 40658584 40664002 Viun1g03308 1 40658584 40664002 ECH