Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03301 ATGGAAAGAAATGGTGATGGGAAGGCTCAAGATTCAGAGACTCTACCTCCCCATTCTGTTCTGAAGATGGGATTGAGAGAACGTAGCAACAACAGCAGCATGGAGGATCCAGATGGGACATTAGCAAGTGTTGCCCAATGCATTGAGCAGTTGCGTCAGAGCTCATCTTCTATGCAGGAGAAAGAGTATTCTTTGAAGCAGTTGTTGGAGCTTATTCATATTCGAGAAAATGCTTTCAGTGCTGTTGGATCTCATTCTCAGGCAGTTCCAGTACTTGTTTCCCTTCTTCGGTCAGGGTCTTCAAATGTGAAGATACAGGCAGCAACTGTATTGGGTTCACTTTGTAAAGAAAATGAGTTGAGGGTGAAAGTCTTGCTTGGAGGATGTATTCCACCTTTGCTTGGTCTACTGAAGTCCAGTTCTGCTGAAGGTCAAGTGGCTGCTGCAAAGACGATTTTTGCTGTTTCTCAAGGTGGTGCCAAAGATCATGTTGGATCAAAAATTTTTTCAACTGAAGGAGTAGTTCCAGTGCTATGGGAACAGTTGCAAAAGGGCCTGAAGACAAATGTAGTTGATAATTTATTAACTGGGGCATTGAAGAATCTCTCCAGCAGCACTGATAGATTCTGGAGTGCTACAATACAAGCTGGAGGGGTGGACATATTAATTAAGTTACTGAAAACAGGGCAGTCTAACACTTTAGCAAATGTGTGCTTTTTACTTGGCTGTATGATGATGGAGGATGCATCTGTTTGTTCAAAATTGTTGACAGCTGAGGAAACTAAACAACTTCTCAAACTTTTAAGCCCTGGTAATGATGCCGCTGTCAGGGCTGAAGCAGCTGGTGCTCTTAAATCTCTTTCTGCTCAGTGCAAAGATGCAAGAAAAGAGATAGCCAATTCCAATGGCATTCCTGCTTTGATTAATGCTACCATAGCTCCTTCCAAAGAGTTCATGCAGGGTGAGTATGCTCAAGCATTACAGGAGAATGCGATGTGTGCTTTAGCAAACATCTCTGGTGGTTTGTCATATGTCATCTCCAGTCTTGGTCAAAGCCTTGAATCATGCTCCTCGCCGGCCCAAGCTGCTGACACGTTGGGGGCTTTAGCTTCAGCTCTTATGATATATGACGACAATGCTGAATCTACCAGGGCAACAGATCCTTTGGCAGTTGAGCAGACATTACTTGAACAATTTAAAACTGGCTTGTCATATCTTGCGCAGGAACGAACTATTGAAGCACTAGCTAGTTTGTATAGCAATCCTATACTGTCAATCAAACTTGCAAATTCTGATGCAAAACGTTTGCTTGTTGGTTTAATAACGATGGCTACTAATGAAGTGCAAGATGAACTTCTAAAATCCCTCTTGACATTGTGCAATACTGAATGCAGTTTGTGGAGTGCACTTCAAGGCCGTGAAGGAGTTCAGTTGTTGATATCTCTTTTGGGGCTTTCATCGGAACAACAACAAGAATGTGCTGTTGCCCTCCTTTGCCTTTTATCTCATGAAAATGATGAAAGTAAATGGGCTATTACTGCTGCTGGTGGTATACCTCCTCTTGTTCAAATTTTGGAGTCAGGATCTGCAAAAGCAAAGGAAGATTCAGCATCAATCCTTAGGAACCTATGTGATCACAGTGAGGATATACGTGCTTGTGTTGAAAGTGCTGATGCTGTTCCTGCATTACTTTGGCTGTTGAAAAATGGAAGCCCAAATGGGAAGGAGATTGCAGCAAAGACTTTGAATCACTTAATCCATAAATCTGATACAGCAACTATCAGTCAGCTTACAGCATTATTGACCAGTGATTTACCTGAATCTAAGGTTTATGTTTTAGACGCTTTGAGAAGTATGCTTTCAGTTGTTGCTCTTTCTGATCTTCTACGTGAAGGTAGTGCTGCCAGTGATGCAATCGATACAATGATTAAATTACTAAGCTCAACCAAGGAAGAAACTCAGGCCAAGTCTGTGTCTGCTCTGGCGGGAATTTTTGAAACGAGGAAAGATGTGCGCGAGAGCAACATTGCTGTTAAAACTCTTTGGTCAGCAATGAAGTTGCTTAATGTTGAATCGGAAAGTATCTTAATGGAGTCCTCGCGCTGTTTGGCTGCGATATTCCTTTCCATCAAAGAGAACAGGGATGTGGTTGCTATTGCTAGAGATGCATTACCCTCCCTAGTTTCACTAGCTAACTCTTCAGTTTTGGAAGTGGCGGAGCTGGCAACATGTGCTGTGGCAAATCTTATTTTGGATAGTGAAATTGCGGAGAAAGCTGTTCCTGAAGAAGTCATCTTGGCTGCTACTAGAGTATTACGTGAAGGCACAATTTCTGGAAAATCACATGCTGCAGCAGCAATTGCTCGCCTTTTACATTCTAAGAGGCAAGTTGATTATGCTATAACTGATTGTGTGAATCGAGCTGGAACTGTTCTTGCACTAGTTTCTTTCTTAGACTTTGCTATCAATGGACTTAGTTCCACATCAGAAGCTCTAGAAGCACTTGCCATGCTGTCTAGGTCAGAAGTGAATGGTGCACACAGTAAGCCTCCTTGGGCAGTTTTGGCTGAATTTCCTAAAAGCATCAGCCCAATAGTTTTGTCCATTACTGATTCAACGCCAGTGTTGCAGGATAAAGCTATTGAAATTTTATCTCGATTATGTAAGGATCAACCTTTTGTTTTGGGAGACATTGTTGTTTCTGCTCCTGGATGTATACCTTCTATAGCTAAGAGGATAATCCATTCCTCTTCTAAAAATATAAAGGTCAAAATTGGTGGAGCTGCTGTTCTTATTTGTGCTGCTAAAGTAAATCACCAGAGGCTGGTGGAGGATCTTAATTTATCAAACTTGTGTGGTAATCTAGTTCAGTCTCTTGTCGATATACTTATTTCTTCACAGGCTACTTTGGATTATCAGCACGATGACAACAGGGAAGTTATCAGCATCTGCAGGCATACAAAAGAAGCCAATGATGGTAAATCAAGCACTGGCACCGCCATTGTTTCTGGTGCCAACTTAGCTATATGGTTACTAACTGTTCTTGCTTGCCATGATGAAAAGTGTAAAACTGCAATAATGGAGGCGGGTGCAATTGAGTTTCTGAGTGACAGGATTGCAAATTGTTTCTCACTGTACAGTCAGATTGACTATAAAGAAGATAGTAGCATGTGGATTTTTGCTTTGTTGCTGGCAATATTGTTTCAGGATAGGGATATTATACGAGCACATGCAACCATGAAATCTATACCAGCACTTGCCAATTTATTGAAGTCAGAGGAATCAGCAAACAGATATTTTGCTGCACAATCCATAGCTAGCTTAGTCTGTAATGGTAGCAGGGGAACACTTCTGTCTGTGGCAAATTCTGGGGCAGCTGGTGGACTTATCTCCTTGCTTGGCTGTGCTGATACTGATATACAGGATCTTCTAGAATTGTCAGAGGAATTTTCTTTGGTGCATTATCCTGATCAAGTTGCTCTTGAGAGGTTGTTTAGAGTTGATGACATAAGAGTTGGTGCCACTTCTCGGAAGGCAATACCTGCTCTAGTTGATTTGCTCAAACCAATTCCAGAACGCCCGGGTGCACCATTTTTAGCACTTGGGCTTTTGACTCAACTTGCTATAGACTGTCCGTCAAATAAGATCGTAATGGTTGAGGCAGGTGCCCTAGAGGCGCTTTCTAAGTATCTTTCACTAGGTCCACAAGATGCAACGGAAGAAGCTGCTACAGATCTGTTAGGGATTCTGTTTAGCAGTGCAGAAATACGGAGACATGAATCAGCATTTGGAGCTGTTACTCAGCTTGTAGCTGTACTGCGTTTAGGAGGAAGAGCTGCAAGGTATAGGGCCGCAAAAGCTTTGGAGAGTTTATTCACCGCTGACCATATTAGAAATGCAGAGACTGCTCGACAAGCTGTCCAGCCATTGGTAGAGATTCTTAATACTGGTTTAGAGAGAGAGCAACATGCTGCAATTGCTGCACTAGTTAGGTTACTCAGTGAAAATCCTTCAAAAGCACTTGCTGTTGCTGATGTTGAGATGAATGCAGTGGATGTTCTTTGTAGGATTCTTTCATCAGATTGTTCAATGGACCTCAAAGGGGATGCTGCTGAATTATGTTCTGTTCTTTTTGGAAATACAAGGATTCGGTCCACAATGGCTGCTGCACGTTGTGTTGAACCTCTAGTCACTCTCCTTGTAAGTGAGTTTAGTCCTTCTCACCATTCAGTTGTTCGGGCATTGGATAGGCTTGTTGATGATGAGCAACTAGCTGAATTAGTTGCTGCACATGGTGCAGTTATTCCTCTTGTTGGCCTACTTTATGGTAGGAATTACGTACTTCATGAGGCCATTTCCAGAGCTCTGGTCAAGTTGGGAAAAGACAGGCCGGCTTGCAAAATGGAAATGGTGAAAGCTGGAGTTATTGAAAGCATACTTGACATCCTTCATGAAGCACCTGATTATCTATGTGCAGCTTTTGCAGAATTGTTGCGTATATTGACCAATAATGCTAGCATAGCAAAAGGACCACCAGCTGCTAAAGTTGTTGAACCCCTGTTTATGTTGCTAATAAGACAAGACTTTGGGCCAGATGGACAACATAGTGCATTGCAGGTTTTGGTTAATATTTTAGAACATCCACAATGTCGTGCTGATTACACATTGTCTTCTCACCAAGCTATTGAACCTCTTATCCCTTTGCTTGATTCTCCAATATCAGCAGTGCAACAGTTGGCTGCTGAGCTTCTCTCACATCTTCTTTTAGAAGAACACCTTCAGAAAGATCCAGTAACACAACATGTAATTGGCCCTCTTATACGAGTTCTTGGTTCTGGTATACATATATTGCAACAGAGAGCTGTGAAGGCCCTGGTCAGTATTGCACTGATATGGCCAAATGAAATTGCAAAGGAGGGTGGTGTTATTGAAATTTCAAAAGTTATCTTACAAGCAGATCCTTCCATTCCTCATGCTTTATGGGAATCTGCGGCCTCTGTTTTGGCTAGTATTCTGCAATTTAGTTCTGAATACTACCTAGAAGTTCCAGTTGCTGTTTTGGTTAGGTTGCTTCGATCTGGCTTAGAAAGCACAGTTGTTGGTGCATTAAATGCTCTCCTTGTGTTGGAAAGTGATGATGGAACTAGTGCTGAAGCAATGGCTGAAAGTGGTGCCATAGAGGCTCTCTTGGAGCTCCTAAGATCTCATCAGTGCGAGGAAACCGCTGCAAGACTCTTAGAAGTATTGCTGAACAATGTAAAGATCAGAGAAACAAAAGTTACTAAATCAGCCATCTTACCATTATCCCATTATCTCTTGGACCCACAAACCCAAGCACAACAAGCAAGGTTATTAGCAACATTGGCTCTTGGTGATCTATTTCAGAACGAGGGTCTTGCTCGGTCAAGCGATGCAGTTTCAGCTTGTCGTGCTTTAGTGAATGTGCTTGAAGATCAGCCAACTGAAGAAATGAAAGTGGTAGCCATTTGTGCTCTACAAAACCTTGTGATGAACAGTCGATCAAATAAAAGAGCAGTTGCAGAGGCTGGTGGGGTTCAGGTTATTTTGGATCTGATAAGTTCAAGTGATCCTGAAACATCTGTTCAGGCTGCAATGTTTATTAAACTTCTATTTTCAAATCATACCATTCAAGAGTATGCTTCTAGTGAAACAGTCAGAGCAATAACTGCTGCTATTGAAAAGGACTTATGGGCTACTGGAACTGTGAACGAAGAGTATCTTAAAGCCTTAAATTCTCTGTTTAGCAACTTCCCAAGACTGAGAGCAACTGAGCCAGCAACACTTAGCATTCCCCATCTGGTTACATCCTTAAAGACAGGCTCTGAGGCTACTCAGGAGGCTGCCTTGGATGCACTTTTCCTGCTTAGGCAAGCTTGGTCAGCATGTCCAGCAGAAGTTTCAAGAGCTCAATCAATAGCAGCTGCAGATGCTATTCCTTTGCTGCAGTACTTAATCCAGTCTGCCCCTCCTCGCTTTCAGGAGAAGGCAGAGTTTTTATTGCAGTGTTTGCCAGGAACTTTGGTGGTGATCATCAAGCGTGGTAACAATATGAAGCAATCTGTCGGAAACCCAAGTGTTTTTTGCAAGCTTACGCTTGGAAACACTCCTCCAAGGCAAACCAAGGTGGTCTCAACTGGCCCCAATCCGGAGTGGGAAGAGAGCTTTTCATGGTCCTTTGAGAGTCCTCCAAAAGGCCAGAAGCTTCACATTTCTTGCAAAAACAAGAGCAAAATGGGAAAGAGTTCATTTGGGAAAGTGACAATCCAGATTGATCGGGTAGTAATGCTCGGAGCAGTATCTGGAGAGTACACTCTTTTGCCAGAAAGTAAGAGCGGCCCTTCGAGGAATTTAGAAATAGAATTCCAGTGGTCGAACAAGTGA 6402 0.4252 MERNGDGKAQDSETLPPHSVLKMGLRERSNNSSMEDPDGTLASVAQCIEQLRQSSSSMQEKEYSLKQLLELIHIRENAFSAVGSHSQAVPVLVSLLRSGSSNVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQVAAAKTIFAVSQGGAKDHVGSKIFSTEGVVPVLWEQLQKGLKTNVVDNLLTGALKNLSSSTDRFWSATIQAGGVDILIKLLKTGQSNTLANVCFLLGCMMMEDASVCSKLLTAEETKQLLKLLSPGNDAAVRAEAAGALKSLSAQCKDARKEIANSNGIPALINATIAPSKEFMQGEYAQALQENAMCALANISGGLSYVISSLGQSLESCSSPAQAADTLGALASALMIYDDNAESTRATDPLAVEQTLLEQFKTGLSYLAQERTIEALASLYSNPILSIKLANSDAKRLLVGLITMATNEVQDELLKSLLTLCNTECSLWSALQGREGVQLLISLLGLSSEQQQECAVALLCLLSHENDESKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCDHSEDIRACVESADAVPALLWLLKNGSPNGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALRSMLSVVALSDLLREGSAASDAIDTMIKLLSSTKEETQAKSVSALAGIFETRKDVRESNIAVKTLWSAMKLLNVESESILMESSRCLAAIFLSIKENRDVVAIARDALPSLVSLANSSVLEVAELATCAVANLILDSEIAEKAVPEEVILAATRVLREGTISGKSHAAAAIARLLHSKRQVDYAITDCVNRAGTVLALVSFLDFAINGLSSTSEALEALAMLSRSEVNGAHSKPPWAVLAEFPKSISPIVLSITDSTPVLQDKAIEILSRLCKDQPFVLGDIVVSAPGCIPSIAKRIIHSSSKNIKVKIGGAAVLICAAKVNHQRLVEDLNLSNLCGNLVQSLVDILISSQATLDYQHDDNREVISICRHTKEANDGKSSTGTAIVSGANLAIWLLTVLACHDEKCKTAIMEAGAIEFLSDRIANCFSLYSQIDYKEDSSMWIFALLLAILFQDRDIIRAHATMKSIPALANLLKSEESANRYFAAQSIASLVCNGSRGTLLSVANSGAAGGLISLLGCADTDIQDLLELSEEFSLVHYPDQVALERLFRVDDIRVGATSRKAIPALVDLLKPIPERPGAPFLALGLLTQLAIDCPSNKIVMVEAGALEALSKYLSLGPQDATEEAATDLLGILFSSAEIRRHESAFGAVTQLVAVLRLGGRAARYRAAKALESLFTADHIRNAETARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSKALAVADVEMNAVDVLCRILSSDCSMDLKGDAAELCSVLFGNTRIRSTMAAARCVEPLVTLLVSEFSPSHHSVVRALDRLVDDEQLAELVAAHGAVIPLVGLLYGRNYVLHEAISRALVKLGKDRPACKMEMVKAGVIESILDILHEAPDYLCAAFAELLRILTNNASIAKGPPAAKVVEPLFMLLIRQDFGPDGQHSALQVLVNILEHPQCRADYTLSSHQAIEPLIPLLDSPISAVQQLAAELLSHLLLEEHLQKDPVTQHVIGPLIRVLGSGIHILQQRAVKALVSIALIWPNEIAKEGGVIEISKVILQADPSIPHALWESAASVLASILQFSSEYYLEVPVAVLVRLLRSGLESTVVGALNALLVLESDDGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNVKIRETKVTKSAILPLSHYLLDPQTQAQQARLLATLALGDLFQNEGLARSSDAVSACRALVNVLEDQPTEEMKVVAICALQNLVMNSRSNKRAVAEAGGVQVILDLISSSDPETSVQAAMFIKLLFSNHTIQEYASSETVRAITAAIEKDLWATGTVNEEYLKALNSLFSNFPRLRATEPATLSIPHLVTSLKTGSEATQEAALDALFLLRQAWSACPAEVSRAQSIAAADAIPLLQYLIQSAPPRFQEKAEFLLQCLPGTLVVIIKRGNNMKQSVGNPSVFCKLTLGNTPPRQTKVVSTGPNPEWEESFSWSFESPPKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVSGEYTLLPESKSGPSRNLEIEFQWSNK 2133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03301 2133 Gene3D - 20 401 IPR011989 -
Viun1g03301 2133 Gene3D - 1349 1634 IPR011989 -
Viun1g03301 2133 Gene3D - 633 849 IPR011989 -
Viun1g03301 2133 SMART C2_3c 2013 2109 IPR000008 -
Viun1g03301 2133 SUPERFAMILY ARM repeat 1168 1550 IPR016024 -
Viun1g03301 2133 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1807 1850 IPR000225 GO:0005515
Viun1g03301 2133 Gene3D C2 domain 2012 2133 IPR035892 -
Viun1g03301 2133 SUPERFAMILY ARM repeat 858 1141 IPR016024 -
Viun1g03301 2133 Gene3D - 430 632 IPR011989 -
Viun1g03301 2133 MobiDBLite consensus disorder prediction 1 38 - -
Viun1g03301 2133 Coils Coil 277 297 - -
Viun1g03301 2133 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1178 1222 IPR000225 GO:0005515
Viun1g03301 2133 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 2012 2133 - -
Viun1g03301 2133 FunFam Coatomer beta subunit 1598 2011 - -
Viun1g03301 2133 SUPERFAMILY ARM repeat 41 793 IPR016024 -
Viun1g03301 2133 SMART arm_5 1463 1503 IPR000225 GO:0005515
Viun1g03301 2133 SMART arm_5 1839 1879 IPR000225 GO:0005515
Viun1g03301 2133 SMART arm_5 710 751 IPR000225 GO:0005515
Viun1g03301 2133 SMART arm_5 1421 1461 IPR000225 GO:0005515
Viun1g03301 2133 SMART arm_5 1293 1334 IPR000225 GO:0005515
Viun1g03301 2133 SMART arm_5 117 157 IPR000225 GO:0005515
Viun1g03301 2133 SMART arm_5 1712 1751 IPR000225 GO:0005515
Viun1g03301 2133 SMART arm_5 464 503 IPR000225 GO:0005515
Viun1g03301 2133 SMART arm_5 505 545 IPR000225 GO:0005515
Viun1g03301 2133 SMART arm_5 248 289 IPR000225 GO:0005515
Viun1g03301 2133 SMART arm_5 547 587 IPR000225 GO:0005515
Viun1g03301 2133 SMART arm_5 798 840 IPR000225 GO:0005515
Viun1g03301 2133 SMART arm_5 1211 1252 IPR000225 GO:0005515
Viun1g03301 2133 SMART arm_5 291 340 IPR000225 GO:0005515
Viun1g03301 2133 SMART arm_5 1166 1209 IPR000225 GO:0005515
Viun1g03301 2133 SMART arm_5 75 116 IPR000225 GO:0005515
Viun1g03301 2133 SMART arm_5 1380 1420 IPR000225 GO:0005515
Viun1g03301 2133 SMART arm_5 1547 1589 IPR000225 GO:0005515
Viun1g03301 2133 Pfam C2 domain 2012 2108 IPR000008 -
Viun1g03301 2133 Gene3D - 855 1348 IPR011989 -
Viun1g03301 2133 Gene3D - 1635 2011 IPR011989 -
Viun1g03301 2133 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 1362 1596 - -
Viun1g03301 2133 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2011 2130 IPR035892 -
Viun1g03301 2133 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 516 558 IPR000225 GO:0005515
Viun1g03301 2133 SUPERFAMILY ARM repeat 197 462 IPR016024 -
Viun1g03301 2133 Pfam Armadillo/beta-catenin-like repeat 85 115 IPR000225 GO:0005515
Viun1g03301 2133 Pfam Armadillo/beta-catenin-like repeat 505 545 IPR000225 GO:0005515
Viun1g03301 2133 ProSiteProfiles C2 domain profile. 1995 2110 IPR000008 -
Viun1g03301 2133 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 8 2133 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Viun1g03301 2133 SUPERFAMILY ARM repeat 1618 2010 IPR016024 -
Viun1g03301 2133 CDD C2 2014 2104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03301 Viun-Chr1 40619315 40629754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03301 478 600 U-box Gene Family AT2G23140 41.935 3.51e-12 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03301 - - gmx:100816765 3786.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00976 3 6012530 6023489 Viun1g03301 1 40619315 40629754 PCT