Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03298 ATGACACCTCTCTCAAAGCTCTTTCACAAGTTGTGCGCCGAAATTATAATCCTATTAGCATCCCTCATAATAGAACTCATCATTCTGATTCAGAAAGTAAAATCATCGTCACGCGCAATCAGCACCCAGCAGTACCTGAAATTGATCGAGAAGAAGAACCCCACGATCTGCTACACCAAAGGGTTGTTGAAGGCGGAACAGGGTGGTGCAGAGTGCAGGGTATGCCTGTGCGAATTGGAGGAAGGGGAGAAGGTGAGAAAGCTGCAATGCCGTCACATGTTTCACAGGGATTGTTTGGACAAGTGGTTGCAACAGTATTGGGCCACGTGTCCTCTTTGTCGGAAACAAGTGGTGCCGGAAGATCTTGTGTTCAAGCACCGTCAGCATCAGAATCAAACAGAGGCAGGTTTTGACGGGAATCATGAAGACAACCTTCCCTATTTTTTATCAGCATTTCGTCGTGGCAACACTCTGCACAGATATTTCTGA 489 0.4663 MTPLSKLFHKLCAEIIILLASLIIELIILIQKVKSSSRAISTQQYLKLIEKKNPTICYTKGLLKAEQGGAECRVCLCELEEGEKVRKLQCRHMFHRDCLDKWLQQYWATCPLCRKQVVPEDLVFKHRQHQNQTEAGFDGNHEDNLPYFLSAFRRGNTLHRYF 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03298 162 PANTHER - 1 157 - -
Viun1g03298 162 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 30 119 IPR013083 -
Viun1g03298 162 ProSiteProfiles Zinc finger RING-type profile. 72 114 IPR001841 -
Viun1g03298 162 SMART ring_2 72 113 IPR001841 -
Viun1g03298 162 Pfam Ring finger domain 71 114 IPR001841 -
Viun1g03298 162 SUPERFAMILY RING/U-box 54 120 - -
Viun1g03298 162 CDD RING-H2_PA-TM-RING 71 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03298 Viun-Chr1 40588025 40588898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03298 70 125 C3H Transcription Factor Family AT1G15100 57.143 7.38e-19 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03298 K16282 - gmx:102661897 214.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00971 3 5973926 5975077 Viun1g03298 1 40588025 40588898 PCT