Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03297 ATGGCCGATCACTCAGACTCTTCTCCTCTCGTCCCTCCCCTTCCTCTCACTGACCCTTCCGAGATCGACCTCGAAGCTGGTCCCTCCGAACAAATCCAATGCCGAATTTGTCTCGAAACCGATGGTAGAGATTTCATAGCCCCTTGTAAGTGCAAAGGTACATCCAAATATGTACACCGAGAATGTTTGGATCATTGGCGAGCAATTAAGGAAGGGTTTGCCTTTGCTCACTGTACAACATGCAAGGCTCCTTACCATTTGCGTGTTCATGTTGCTGCTGATAGGAAATGGCGGACCCTGAAATTTCGGTTTTTTGTCACCAGAGACATTCTGTTTATTTTTCTGTCTGTCCAGCTTGTCATTGCATCACTGGCATATTTGGTTTATCTAATAGATGGTTACCAGCAATATTGGCTTCGTCTTCTCTGGGGTTTTGACAGTGAAATGAGCTTTTACTACATATGTGGAGCTCTATTATTTTTCGCACTGCTTGGTCTTTCTGGGTGCTTCATTACTTGTTATGATCGAAGAGTTCGCAATGATTTAGCTCAGCCGTGTAGAGAGTTATGTCTTTGTTGCTGTCAACCTGGGGTTTGTGCAGACTGTCATTTGCCAGGCACTCTTTGTATGTGGACTGATTGCACTACTTGCTTTGAGAGTTGTGGAACCATGGCAACTGAATGTGGTGGCTGTTTGGGTGGTGCCGGGGAAGCTGGGCTACCATTATTATTCATAATGGCTTTGGTTGTTCTGGGACTTTTTACTGTAATTGGGATATTCTACAGCGTTTTGGTGGCTACCATGGTAGGTCAGCGGATATGGCAACGTCATTATCACATACTTGCAAAAAGGATGTTAACAAAGGAGTATGTGGTTGAAGACGTCGATGGAGAGCTGACAGGATCTGATTGGTCTCCCCCAGCTCTCCCTCCCGAGCATGTTCAGCAGTTGAAAACATTGGGTCTACTGTGA 972 0.4547 MADHSDSSPLVPPLPLTDPSEIDLEAGPSEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAIKEGFAFAHCTTCKAPYHLRVHVAADRKWRTLKFRFFVTRDILFIFLSVQLVIASLAYLVYLIDGYQQYWLRLLWGFDSEMSFYYICGALLFFALLGLSGCFITCYDRRVRNDLAQPCRELCLCCCQPGVCADCHLPGTLCMWTDCTTCFESCGTMATECGGCLGGAGEAGLPLLFIMALVVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGELTGSDWSPPALPPEHVQQLKTLGLL 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03297 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 96 IPR013083 -
Viun1g03297 323 CDD RING_CH-C4HC3_MARCH 34 82 - -
Viun1g03297 323 Pfam RING-variant domain 34 81 IPR011016 GO:0008270
Viun1g03297 323 SMART ringv_2 33 82 IPR011016 GO:0008270
Viun1g03297 323 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 20 322 - -
Viun1g03297 323 ProSiteProfiles Zinc finger RING-CH-type profile. 26 88 IPR011016 GO:0008270
Viun1g03297 323 SUPERFAMILY RING/U-box 29 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03297 Viun-Chr1 40566419 40572140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03297 1 323 C3H Transcription Factor Family AT2G22120 86.420 0.0 566
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03297 - - gmx:100791777 651.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00970 3 5959138 5962201 Viun1g03297 1 40566419 40572140 PCT