Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03296 ATGAATTCAGCATCCCCACAGTTCGTTTCCTCGAGAAGGATGAGTGTGTACGATCCAATCCACCAGATTAGTATGTGGGGAGAAGGCTTCAAAAGTAATGGTAATTTAAGTGCATCCATGCCTTTAATAGACGAGACAGACATGAAGTTAGATAGTCAGTCAGAGGATGCTTCTCATGGAATACTGGGAGCACCTAATAAGTACGACCAAGAAGCTAACAAGCCTACTGATAAGATACAAAGACGTCTTGCACAAAATCGAGAGGCTGCTCGAAAGAGCCGTTTGAGGAAAAAGGCCTACGTGCAGCAGTTAGAATCAAGTCGTTTGAAGTTGATGCAGTTGGAGCAAGAGCTTGAACGTGCAAGACAGCAGGGAATGTACATAGGTGGTGGGTTGGACTCTAATCATCTGGGTTTTGCTGGATCGGTAAATTCAGGAATTACAACCTTTGAGACGGAGTACGGACACTGGGTGAACGAGCAGAATAGGCAAATCACAGAACTGAGAAGTGCTTTAAATGCTCATATCGGTGACATAGAGCTGAGGATTCTGGTAGATGGTATGATGAACCACTACGCTGAAATCTTTCGCATGAAATCTGCTGCTGCAAAAGCCGATGTGTTCTATGTCATGTCTGGTATGTGGAAAACAACGGCCGAAAGATTTTTCCTCTGGATCGGAGGCTTTCGCCCCTCTGAGCTTCTAAAGGTTCTTGGGCCCCTGATTGAACCTCTGACAGAGCAACAACGGTTGGATATCTATAACCTTGGACAATCATGTCAGCAAGCAGAAGATGCCCTGTCACAAGGTATGGACAAACTCCGGCAAACTCTTGCTGATAGTGTAGCAGCTGGACAGTTCATGGAAGGAACGTACATTCCACAGATGACTTCTGCAATGGAGAAATTGGAAGCTCTGGTGAGCTTTGTGAACCAGGCTGATCATCTACGGCAGGGAACGTTGCAGCAGATGTCTCGAATACTTACAATCCGTCAGGCTGCTCGATGCTTGCTTGCTTTGGGAGAATATTTCCAGCGCCTGAGGGCTTTGAGCTCACTCTGGTCTAACAGACCCCGTGAACCTGCTTAG 1089 0.4646 MNSASPQFVSSRRMSVYDPIHQISMWGEGFKSNGNLSASMPLIDETDMKLDSQSEDASHGILGAPNKYDQEANKPTDKIQRRLAQNREAARKSRLRKKAYVQQLESSRLKLMQLEQELERARQQGMYIGGGLDSNHLGFAGSVNSGITTFETEYGHWVNEQNRQITELRSALNAHIGDIELRILVDGMMNHYAEIFRMKSAAAKADVFYVMSGMWKTTAERFFLWIGGFRPSELLKVLGPLIEPLTEQQRLDIYNLGQSCQQAEDALSQGMDKLRQTLADSVAAGQFMEGTYIPQMTSAMEKLEALVSFVNQADHLRQGTLQQMSRILTIRQAARCLLALGEYFQRLRALSSLWSNRPREPA 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03296 362 ProSiteProfiles DOG1 domain profile. 147 357 IPR025422 GO:0006351|GO:0043565
Viun1g03296 362 SUPERFAMILY Leucine zipper domain 78 120 IPR046347 GO:0003700|GO:0006355
Viun1g03296 362 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 81 96 IPR004827 GO:0003700|GO:0006355
Viun1g03296 362 PANTHER TRANSCRIPTION FACTOR TGA9 2 360 - -
Viun1g03296 362 Gene3D - 77 126 - -
Viun1g03296 362 CDD bZIP_HBP1b-like 78 130 - -
Viun1g03296 362 SMART brlzneu 74 134 IPR004827 GO:0003700|GO:0006355
Viun1g03296 362 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 76 120 IPR004827 GO:0003700|GO:0006355
Viun1g03296 362 Coils Coil 97 124 - -
Viun1g03296 362 FunFam BZIP family transcription factor 77 126 - -
Viun1g03296 362 Pfam bZIP transcription factor 76 112 IPR004827 GO:0003700|GO:0006355
Viun1g03296 362 Pfam Seed dormancy control 164 238 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03296 Viun-Chr1 40551738 40555459 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g03296 1 362 Calmodulin-binding Proteins AT5G10030 70.330 0.0 525
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Viun1g03296 DOG1 2.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03296 K14431 - gmx:100793353 688.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03296 1 40551738 40555459 Viun1g03296 1 40551738 40555459 ECH
Viun3g00968 3 5927736 5932419 Viun1g03296 1 40551738 40555459 PCT